Detail information of GWHGAAEX004326/evm.TU.scaffold_148.37
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146298365|ref|YP_001192956.1| | 9.00E-32 | two component regulator [Flavobacterium johnsoniae UW101] |
| nr | gi|743854728|ref|XP_010941035.1| | 0 | PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 [Elaeis guineensis] |
| Swissprot | tr|Q9FIZ3|GSO2_ARATH | 1.00E-72 | LRR receptor-like serine/threonine-protein kinase GSO2 (Precursor) |
| trEMBL | tr|M0S4R1|M0S4R1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P03200_001} |
| TAIR | AT2G45340 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000147 | 712250 | 715415 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004326
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 25 | 63 | 9.90E-09 |
| PF13855.5 | LRR_8 | 139 | 198 | 1.20E-09 |
| PF07714.16 | Pkinase_Tyr | 397 | 658 | 3.60E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-IV |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.600 |
| SRR2545915 | Juvenile tuber | 3.860 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.940 |
| SRR5643514 | five period of Gastrodia elata | 8.640 | |
| SRR5643515 | five period of Gastrodia elata | 5.360 | |
| SRR5643524 | five period of Gastrodia elata | 7.970 | |
| SRR5643525 | five period of Gastrodia elata | 0.410 | |
| SRR5643528 | five period of Gastrodia elata | 0.330 | |
| SRR5643658 | five period of Gastrodia elata | 0.170 | |
| SRR5643659 | five period of Gastrodia elata | 3.440 | |
| SRR5643660 | five period of Gastrodia elata | 2.280 | |
| SRR5643661 | five period of Gastrodia elata | 3.870 | |
| SRR5643662 | five period of Gastrodia elata | 2.220 | |
| SRR5643663 | five period of Gastrodia elata | 2.060 | |
| SRR5643664 | five period of Gastrodia elata | 1.930 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.620 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.970 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.690 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.220 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.470 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.64 |
| Juven | Juvenile tuber | 2.85 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.14 | |
| Mother_Juven | Mother tuber of Juvenile | 0.97 |