Gene detail

Detail information of GWHGAAEX004327/evm.TU.scaffold_148.38

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1300	Vesicle trafficking protein Sec1
nr	gi\|695060683\|ref\|XP_009418742.1\|	PREDICTED: SNARE-interacting protein KEULE-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9C5X3\|KEULE_ARATH	SNARE-interacting protein KEULE
trEMBL	tr\|M0U353\|M0U353_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P24460_001}
TAIR	AT1G12360	Sec1/munc18-like (SM) proteins superfamily

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000147	729280	815467	-

Transcript Sequence
>GWHTAAEX004327 TGAAGATTCATTTTCTTGCGGGTTCAGTTTCGATCAATCCTACGTTGCCGAGTCTTAGTGTGGACTGTGAAATGCTGTCTAACTAATCCAAGGATTCCGAATAGGCCGTGCCTTGAGTTCCGATTTCCTCGTCGCTCTTCTACATGGCGGCTGCCGGCGATCTCTCAAATCAATGGACGAGATTGTTGCTTGCGTTCCAACCTTAATCTCCATTCGTTGCTTCCTTCCACTATATTCGCGCGCAATGGTAGATATCCCTCGCTCCCATTCTTGGGTTCCCTTCTTCCATAAAGCCGCGAACGAGAAGAAATTCCGGAATCCACGATCGGATTCTTTTCTCATTTTCAAGGAGGAGCCGATTGCTTCGCCTCCCGTTTGCATTGAAGCGCCTTGCGGTGGGCGGAAGTCATGTCAGAATCGGGATCATCCAATGGCGGTGGCGTTGGGGATTACAAGACCTTTCGCCAGATAAGCCGAGATAGGCTGTTGCATGAAATGCTTCGGTCTGCAAATGTGAAGGAATCCAAATCTGCATGGAAGGTACTAATAATGGATAAATTTACTGTCAAAATTATGTCCTATTCGTGTAAGATGTCAGATATCACAGACGAGGGAATTTCATTGGTTGAAGATCTTTTCAAACGAAGGGAGCCAATGATTTCAATGGACGCAATATATTTTATACAGCCAACAAAAGAAAATATGATCATGTTTCTGTCTGACATGTCAGGGAGGTGTCCTTTATACAAGAAGGCATACATTAATTTCAGTTCACCAATACCAAAAGAACTAGTTGCTTATATTAAAAATGACTCCAGCATCATACCCCGCATAGGTGCATTAAACGAGATGAACATGGAGTATTTTGCTATAGATACTCAGGCCTTTGTTACTGATCATGAAATGGCATTATGGGAACTTTATGGAGAAAACCAAGCAAATAGCAGCTTGTGCTTGAACGTGATGGCTACACGCATTGCTACAGCTTTTGCTTCCATGCGGGAATTTCCTTACGTGCGATATCGTGCTTTCAAAGCCTCTACAAATGCTACATCTGAGAATTCATCTCGTGATTTAATACCTACTAAACTTGCCACTGAAGTTTGGAACATTATTTCTAAGTATAAAACATCGATACAAGATTTTCCCCAGAAAGAGACGTGTGATTTGCTAATTGTAGATCGATCAGTTGACCTGATTGCTCCTGCCATTCATGAATGGACTTATGATGCCATGTGCCATGATCTACTAGATATGGATGGGAACAAGTATACATATGTGGTACCGGGAAAATCTGGGTTGATGACTGAAAAGGAGGCTCTTTTGGAGGATCATGACCCTCTTTGGTTTGAGCTTCGGCATGTACACATAGCTGATGCTAGTGAAAAGCTACATGAAAAAATGGCCAACTTCAAGTCAAAAAACAAAGCTGCTCAACTTCAACAGAGTGCTAAAGATGGTGACGAGCTATCAACTCGTGACTTGCAAAAGATGGTTCAAGCTCTGCCACAGTACAACGAGCAAATGGAAAAGCTGTCACTTCATGTTGAGATTGCAGGAAAAGTAAATACATTGATTAGAGATTTGGGACTTAAAGATATTGGCCAGTTAGAGCAAGACCTTGTTTTTGGTGATGCAGGAGCGAAAGAAGTGATTAATTTTCTGCGAGCAAAACAGGATGCCTCTGCAGAGAACAAGTTACGTCTGCTGATGATATATGCTTGCGTATATCCAGAAAAATTTGAAGGTGACAAAGGCTCTAAATTGATGCAGCTAGCCAAACTGGCACCTGAAGATATGAGCACTGTGCTCAATTTAAAGTATTTGGGCGGCTTAGACTCCGCTAAGGCCTCAGGAGGAACTTTTTCTCTCAAATTTGATGCTCAAAAGAAGAAGCATGCGGCTAGGAAAGAGCGGGAGAGTGAGGATGAAACTTGGCAATTATCACGGTTCTATCCAGTGGTAGAGGAGCTAGTTGAGAAGCTTAGCAAAGGAGAACTTCAAAAGGATGAGTATCCATATGTGAATGGGCCCACTCTTATTAAGCAGGAAGGATTGAATGCCAGTTCATCTGCACTAAAGGGATCGAATCAGGTTCCACATTCTATAAGATCCAAGCGAACCCCAACATGGGCTAAGCAGCGTGTTTCTGATGACGGCACTTCAAGTGATTCTGTATTGAGGCACGCATCTTCTGATTTCAAGAGAATGGGCCAGCGAATTTTTGTTTTCATAATTGGTGGCGCTACTCGATCAGAGTTAAGAACAGCTCACAAGCTCACAGGGAAATTAAGGAGGGAAGTCATACTTGGGTCTTCTAGTTTGGACGATCCTCCACAGTTTATCAATAAACTGAAGCAACTTAGTTCTAAAGAAGTTCCCACCAGACAACTGCCGATGAGCAACTATTATTAGCTTAGTATGCTGGGCGCCTCTCTCTTCTGCTATATTTGCAGATATTTGCTTACCACCCAAATCATCCATTTTTACAAAACTAGCACCCACCCCAAAATATTACCATTGTAGTTGAGCAAGGGCTGAGCTTTTTTATTAGGAATATGCTGCGATGCCCTAAATATTCTCCAATTTCTCCCTAGAAGATAAGCAAAAGTATTGAAAAAGAATGAGAGAGAAATATGGGGTTTACACTTAAGTGCAGTAAACCAAATCCTCTTTTATATTTGGTAGTTTTAATTCTATTTTCAGTTTTGAAAAAATATTGGAGCACTGTAACTGTGAGTTTTTTGGTTTAAGAATTGATATTTTGTTATAATTTTGTTGAATTTTTGTTAAAACATTTTTGTCTATTTTTGTATATTGATT

Network for GWHGAAEX004327

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00995.22	Sec1	44	647	1.00E-116

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15292	STXBP1, MUNC18-1	Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:0016192	Biological Process	vesicle-mediated transport
GO:0006904	Biological Process	vesicle docking involved in exocytosis

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.990
SRP064423	SRR2545915	Juvenile tuber	7.030
SRP108465	SRR5643513	five period of Gastrodia elata	5.220
	SRR5643514	five period of Gastrodia elata	6.300
	SRR5643515	five period of Gastrodia elata	5.370
	SRR5643524	five period of Gastrodia elata	5.530
	SRR5643525	five period of Gastrodia elata	9.220
	SRR5643528	five period of Gastrodia elata	6.860
	SRR5643658	five period of Gastrodia elata	8.090
	SRR5643659	five period of Gastrodia elata	6.510
	SRR5643660	five period of Gastrodia elata	7.290
	SRR5643661	five period of Gastrodia elata	6.310
	SRR5643662	five period of Gastrodia elata	6.720
	SRR5643663	five period of Gastrodia elata	6.720
	SRR5643664	five period of Gastrodia elata	5.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.480
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.480
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.750
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.300
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.310
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.870
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.770
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.900
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.900
SRP279888	Gastro	Gastrodia elata tuber	5.58
	Juven	Juvenile tuber	8.15
	Mother_Gastro	Mother tuber of Gastrodia elata	4.32
	Mother_Juven	Mother tuber of Juvenile	6.34