Detail information of GWHGAAEX004329/evm.TU.scaffold_148.43


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG23260DNA-binding subunit of a DNA-dependent protein kinase (Ku80 autoantigen)
nrgi|743831381|ref|XP_010934679.1|0PREDICTED: ATP-dependent DNA helicase 2 subunit KU80 isoform X2 [Elaeis guineensis]
Swissprottr|Q75IP6|KU80_ORYSJ0ATP-dependent DNA helicase 2 subunit KU80
trEMBLtr|M5X3R3|M5X3R3_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ20141.1}
TAIRAT1G480500Ku80 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000147873614913001-
Transcript Sequence

Network for GWHGAAEX004329

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03731.14Ku_N71483.20E-12
PF02735.15Ku2264303.10E-44
PF03730.13Ku_C4515315.30E-08
PF08785.10Ku_PK_bind5636751.90E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10885XRCC5, KU80, G22P2 Non-homologous end-joining map03450

Gene Ontology

GO term OntologyName
GO:0000723Biological Processtelomere maintenance
GO:0006310Biological ProcessDNA recombination
GO:0006303Biological Processdouble-strand break repair via nonhomologous end joining
GO:0003678Molecular FunctionDNA helicase activity
GO:0042162Molecular Functiontelomeric DNA binding
GO:0003684Molecular Functiondamaged DNA binding
GO:0016817Molecular Functionhydrolase activity, acting on acid anhydrides
GO:0003677Molecular FunctionDNA binding
GO:0005634Cellular Componentnucleus
GO:0043564Cellular ComponentKu70:Ku80 complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms4.940
SRR2545915Juvenile tuber4.380
SRP108465SRR5643513five period of Gastrodia elata11.410
SRR5643514five period of Gastrodia elata16.420
SRR5643515five period of Gastrodia elata11.400
SRR5643524five period of Gastrodia elata15.690
SRR5643525five period of Gastrodia elata5.390
SRR5643528five period of Gastrodia elata6.720
SRR5643658five period of Gastrodia elata8.140
SRR5643659five period of Gastrodia elata2.410
SRR5643660five period of Gastrodia elata1.970
SRR5643661five period of Gastrodia elata2.550
SRR5643662five period of Gastrodia elata0.920
SRR5643663five period of Gastrodia elata1.760
SRR5643664five period of Gastrodia elata0.860
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.230
SRR6049655Rhizomagastrodiae_C368-T10_good_121.560
SRR6049656Rhizomagastrodiae_C368-T07_good_115.960
SRR6049657Rhizomagastrodiae_C368-T07_good_17.020
SRR6049658Rhizomagastrodiae_C368-T04_good_18.930
SRR6049659Rhizomagastrodiae_C368-T04_good_18.140
SRR6049660Rhizomagastrodiae_C368-T01_good_19.610
SRR6049661Rhizomagastrodiae_C368-T04_good_18.690
SRR6049662Rhizomagastrodiae_C368-T01_good_116.950
SRR6049663Rhizomagastrodiae_C368-T01_good_117.530
SRR6049664Rhizomagastrodiae_C368-T10_good_126.440
SRR6049665Rhizomagastrodiae_C368-T10_good_126.440
SRP279888GastroGastrodia elata tuber 1.30
JuvenJuvenile tuber5.96
Mother_GastroMother tuber of Gastrodia elata 11.38
Mother_JuvenMother tuber of Juvenile 9.35