Detail information of GWHGAAEX004334/evm.TU.scaffold_148.48
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|53804450|ref|YP_113939.1| | 3.00E-129 | ATP-dependent helicase HrpA [Methylococcus capsulatus str. Bath] |
| KOG | KOG0924 | 0 | mRNA splicing factor ATP-dependent RNA helicase |
| nr | gi|743767120|ref|XP_010913811.1| | 0 | PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Elaeis guineensis] |
| Swissprot | tr|Q38953|DHX8_ARATH | 0 | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase |
| trEMBL | tr|B9HY36|B9HY36_POPTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:EEF02319.2} |
| TAIR | AT5G13010 | 0 | RNA helicase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000147 | 1037386 | 1078920 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004334
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00270.28 | DEAD | 570 | 724 | 1.40E-07 |
| PF00271.30 | Helicase_C | 770 | 899 | 3.30E-12 |
| PF04408.22 | HA2 | 964 | 1049 | 2.20E-20 |
| PF07717.15 | OB_NTP_bind | 1107 | 1184 | 1.20E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12815 | DHX38, PRP16 | Spliceosome | map03040 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004386 | Molecular Function | helicase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 28.190 |
| SRR2545915 | Juvenile tuber | 21.490 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.560 |
| SRR5643514 | five period of Gastrodia elata | 25.080 | |
| SRR5643515 | five period of Gastrodia elata | 26.270 | |
| SRR5643524 | five period of Gastrodia elata | 26.600 | |
| SRR5643525 | five period of Gastrodia elata | 32.970 | |
| SRR5643528 | five period of Gastrodia elata | 31.510 | |
| SRR5643658 | five period of Gastrodia elata | 29.920 | |
| SRR5643659 | five period of Gastrodia elata | 30.410 | |
| SRR5643660 | five period of Gastrodia elata | 31.500 | |
| SRR5643661 | five period of Gastrodia elata | 28.270 | |
| SRR5643662 | five period of Gastrodia elata | 35.360 | |
| SRR5643663 | five period of Gastrodia elata | 31.980 | |
| SRR5643664 | five period of Gastrodia elata | 40.730 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.880 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.180 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 22.720 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.980 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 21.500 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.550 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 24.370 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 26.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 26.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 33.14 |
| Juven | Juvenile tuber | 38.20 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 36.02 | |
| Mother_Juven | Mother tuber of Juvenile | 37.49 |