Detail information of GWHGAAEX004335/evm.TU.scaffold_148.49


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|78043878|ref|YP_361153.1|6.00E-14negative regulator of genetic competence clpC/mecB [Carboxydothermus hydrogenoformans Z-2901]
nrgi|720069302|ref|XP_010277397.1|2.38E-94PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Nelumbo nucifera]
Swissprottr|Q8GW78|CLP41_ARATH4.00E-74Clp protease-related protein At4g12060, chloroplastic (Precursor)
trEMBLtr|A5B483|A5B483_VITVI7.00E-94Putative uncharacterized protein {ECO:0000313|EMBL:CAN60931.1}
TAIRAT4G253704.00E-74Double Clp-N motif protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000014710798981101339+
Transcript Sequence

Network for GWHGAAEX004335

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02861.19Clp_N1041562.90E-08
PF02861.19Clp_N1962290.00076
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0019538Biological Processprotein metabolic process

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms91.420
SRR2545915Juvenile tuber172.400
SRP108465SRR5643513five period of Gastrodia elata127.610
SRR5643514five period of Gastrodia elata138.330
SRR5643515five period of Gastrodia elata160.130
SRR5643524five period of Gastrodia elata123.910
SRR5643525five period of Gastrodia elata164.640
SRR5643528five period of Gastrodia elata122.380
SRR5643658five period of Gastrodia elata179.260
SRR5643659five period of Gastrodia elata139.630
SRR5643660five period of Gastrodia elata162.990
SRR5643661five period of Gastrodia elata161.410
SRR5643662five period of Gastrodia elata183.140
SRR5643663five period of Gastrodia elata187.840
SRR5643664five period of Gastrodia elata189.760
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1188.360
SRR6049655Rhizomagastrodiae_C368-T10_good_1160.300
SRR6049656Rhizomagastrodiae_C368-T07_good_1185.550
SRR6049657Rhizomagastrodiae_C368-T07_good_1168.300
SRR6049658Rhizomagastrodiae_C368-T04_good_1158.750
SRR6049659Rhizomagastrodiae_C368-T04_good_1158.430
SRR6049660Rhizomagastrodiae_C368-T01_good_1148.740
SRR6049661Rhizomagastrodiae_C368-T04_good_1165.330
SRR6049662Rhizomagastrodiae_C368-T01_good_1116.880
SRR6049663Rhizomagastrodiae_C368-T01_good_1123.240
SRR6049664Rhizomagastrodiae_C368-T10_good_1115.550
SRR6049665Rhizomagastrodiae_C368-T10_good_1115.550
SRP279888GastroGastrodia elata tuber 207.71
JuvenJuvenile tuber142.61
Mother_GastroMother tuber of Gastrodia elata 123.12
Mother_JuvenMother tuber of Juvenile 116.54