Detail information of GWHGAAEX004337/evm.TU.scaffold_148.51
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|743778474|ref|XP_010919698.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g44880 [Elaeis guineensis] |
| Swissprot | tr|Q1PEU4|PP201_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g44880 |
| trEMBL | tr|F6GVA3|F6GVA3_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB43886.1} |
| TAIR | AT2G44880 | 0 | Pentatricopeptide repeat (PPR-like) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000147 | 1115071 | 1117009 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004337
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 112 | 137 | 0.043 |
| PF01535.19 | PPR | 187 | 212 | 0.0053 |
| PF13041.5 | PPR_2 | 243 | 275 | 2.00E-07 |
| PF13041.5 | PPR_2 | 305 | 353 | 7.70E-10 |
| PF01535.19 | PPR | 383 | 408 | 4.30E-05 |
| PF13041.5 | PPR_2 | 410 | 456 | 1.60E-10 |
| PF01535.19 | PPR | 482 | 507 | 0.19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.790 |
| SRR2545915 | Juvenile tuber | 0.540 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.530 |
| SRR5643514 | five period of Gastrodia elata | 0.910 | |
| SRR5643515 | five period of Gastrodia elata | 0.340 | |
| SRR5643524 | five period of Gastrodia elata | 0.470 | |
| SRR5643525 | five period of Gastrodia elata | 0.230 | |
| SRR5643528 | five period of Gastrodia elata | 0.290 | |
| SRR5643658 | five period of Gastrodia elata | 0.060 | |
| SRR5643659 | five period of Gastrodia elata | 1.040 | |
| SRR5643660 | five period of Gastrodia elata | 0.940 | |
| SRR5643661 | five period of Gastrodia elata | 0.630 | |
| SRR5643662 | five period of Gastrodia elata | 1.090 | |
| SRR5643663 | five period of Gastrodia elata | 1.110 | |
| SRR5643664 | five period of Gastrodia elata | 1.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.970 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.130 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.420 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.960 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.740 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.980 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.740 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.98 |
| Juven | Juvenile tuber | 0.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.11 | |
| Mother_Juven | Mother tuber of Juvenile | 0.05 |