Detail information of GWHGAAEX004342/evm.TU.scaffold_148.56


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|530779864|ref|YP_008431664.1|1.00E-25hypothetical protein N186_01315 [Thermofilum sp. 1910b]
KOGKOG00843.00E-134GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins
nrgi|695069949|ref|XP_009381982.1|3.76E-142PREDICTED: GTP-binding protein YPTM2 [Musa acuminata subsp. malaccensis]
Swissprottr|Q05737|YPTM2_MAIZE6.00E-137GTP-binding protein YPTM2
trEMBLtr|A9PEC2|A9PEC2_POPTR5.00E-142GTP-binding family protein {ECO:0000313|EMBL:EEE79284.1}
TAIRAT4G175303.00E-134RAB GTPase homolog 1C

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000014711609601182434-
Transcript Sequence

Network for GWHGAAEX004342

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00071.21Ras101706.80E-67
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K07874RAB1A Autophagy - animal map04140

Gene Ontology

GO term OntologyName
GO:0005525Molecular FunctionGTP binding
GO:0003924Molecular FunctionGTPase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms110.130
SRR2545915Juvenile tuber85.270
SRP108465SRR5643513five period of Gastrodia elata151.210
SRR5643514five period of Gastrodia elata147.370
SRR5643515five period of Gastrodia elata234.810
SRR5643524five period of Gastrodia elata192.150
SRR5643525five period of Gastrodia elata442.840
SRR5643528five period of Gastrodia elata596.090
SRR5643658five period of Gastrodia elata402.870
SRR5643659five period of Gastrodia elata85.900
SRR5643660five period of Gastrodia elata86.740
SRR5643661five period of Gastrodia elata102.810
SRR5643662five period of Gastrodia elata80.650
SRR5643663five period of Gastrodia elata62.700
SRR5643664five period of Gastrodia elata46.160
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_180.790
SRR6049655Rhizomagastrodiae_C368-T10_good_1164.520
SRR6049656Rhizomagastrodiae_C368-T07_good_195.480
SRR6049657Rhizomagastrodiae_C368-T07_good_1113.360
SRR6049658Rhizomagastrodiae_C368-T04_good_1224.810
SRR6049659Rhizomagastrodiae_C368-T04_good_1258.400
SRR6049660Rhizomagastrodiae_C368-T01_good_1125.760
SRR6049661Rhizomagastrodiae_C368-T04_good_1200.870
SRR6049662Rhizomagastrodiae_C368-T01_good_1126.810
SRR6049663Rhizomagastrodiae_C368-T01_good_1145.010
SRR6049664Rhizomagastrodiae_C368-T10_good_1142.800
SRR6049665Rhizomagastrodiae_C368-T10_good_1142.800
SRP279888GastroGastrodia elata tuber 100.29
JuvenJuvenile tuber146.21
Mother_GastroMother tuber of Gastrodia elata 1,064.45
Mother_JuvenMother tuber of Juvenile 667.91