Gene detail

Detail information of GWHGAAEX004345/evm.TU.scaffold_148.61

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2425	6.00E-71	Nuclear protein involved in cell morphogenesis and cell surface growth
nr	gi\|672129952\|ref\|XP_008788499.1\|	9.72E-149	PREDICTED: uncharacterized protein LOC103706229 [Phoenix dactylifera]
trEMBL	tr\|M0RTT8\|M0RTT8_MUSAM	3.00E-125	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P20080_001}
TAIR	AT5G12220	6.00E-71	las1-like family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000147	1264916	1277783	-

Transcript Sequence
>GWHTAAEX004345 CAAGCCTATTTAAGAACGTGATAATGGACTCGAATGACTATGGCAAGAATTCTTCACAGTCTATGGGATACAAGCTCGTTCCTTGGGTGAGTTGGGACGAATGGAATGATGTTAGGAGATCCATTTTCTCATCCTCTCCTAATTTGATCTTCGCAGCCCTTCAAAAAATATCTGCCTGGGAGAGCAGGGGCTGCCTTCCCATTGCTGTTGATTTGACTGCTATAATCATAGAAATCCATCTAAAAGATCCATTTTTCCTTCATCGTAGAGAAGATGGCTTTATTGGTGACGTTCTTGCCTCTGAGAAGATGCTAAACTTGTTGTATTGCATGTTCATCATGAGACTGGTCAATGATTTTGTTGAGCCTGCACATAAGAAAAGTGGACGCTCGATATCAGATATAGCTGATGCACTTGGCATTCCACGAACTTTGGTTGATATTCGTCATGAGAGTTCTCATCGCTGTCTTCCTTCGCTCAAGCTGGCTCGTTTAGCTAGTGTTAAGGCACTTGAGTGGCTGAAGGCTAATTACTGGGAACCTCAGAGACTTGCAGTTCATGATCCAAAAGAAAAAATAAATTCTAGAATACGAGAGGCGATCTCATGTTTAAGTTCCTATCATGTTTCAAAAACAAGTTTTTCAAAGCCCAAAAGAAAGCGCAAAAGAACTACTGTCCTAGTGGCATGCCATAAGCTTTCCCATATGAGTGAAAGGATGGTGGCTTCTAAATCAGATGTTTCAACGTCACAAATGTCCAGGGTGATCAAAAGGACTTCTCATCTTTACTCTCAGCATCCAGCTGAAGTTGTATCGTCTTTGCTCGAATATTTCCTCTCGTTCGCATTAGACATTTCCGACAAAAATGACGAGGAAACCATTGATGAGTCCGAGTGCTGCATTTTGAAACCAATTGCAGAATCTTTAGCTGGCTTTAAGAGGCTAATAACTTTAATCTCCAATAAGAAACCAATACTGTTACTTAGCATGCTGAAGGCGATTTTTAAGATGATCCACGAAAAGGAATCCAAGACTTTTGAAGACGATCAAGTTTGTTGCCATCTTCGATCGTTGGTTCCCTTTCTAATAAGAAATTTAATAGCATTGAAAGAGTCTGGCCAGATTGGGCTGGTCGAAGAAAGTCGAGTCCTTTCTACTGATAATATTACTCGCCCCAAAGTTCTCTTTTCGGCCCTTTTCCATAAATGCCTAACTTTACTGACTCCGGGCAACAGGCATATGCTCAAGTCAGCACTGCTACTTTGTGAGATGAGTGGCATCAGAATGTTGATTGACAGATTCAAGAAACTCCTCCCTTTCTTGGCCGACCCGAGCCCAGATCCATTCCACCCTTCAAGCTATAACAAAAGCCTTCTTACAAATATTCAGCACAGAAACAATGAAGATAAGGATTCAGGGTATATGAGGAGCAATTCTGATGATGAAACGAGTAGGTGGACAGTCACCAAGTCATGGATACCGTGCCCCATTGGCATGCTGCCTTGCTTGCTCAGTTCCGCTCCGGTTGTTCCAGTTTTTGATGCCATGGAAGCTAAAAGAGAGATCGAAATGGAGACGAATCAGCCCAAAACAATTGAAGAGAACGAAATGATTTACGCAGAATCTACAGAAGATTGTAGTGAGGTAGAGCAAACGATACAGAATGAAGGTGCTGATTCTGCAGAACCTGAGGATCCATTTCCTTTGCGGGGCTTGCTGCTAATTGGTGGTATCTGGATGAAGGTTAGTGAAGAGGAATTAGCTTCCATAGAAGAGGATATTAGAACTTTTGTCTAAGCAGGTATTTAGTGGTATTAAGTTCACATTCTATCTGTATGAAGAGTGAGAGAGAGGGATTGATTGTTTCCTTTTTCAGCATAAATTAATAATTATTTGTGTGATTTCAGAGCTTTATAGGAATATTATGGAATGATCTTGTAGCTGTTTCATGAGCAATATTTACACATTGAACTAGGACGAAAAATAAATCATGTTATAGTATGAAAAACTTTTTTAAATCTTTATTTGTTTTGGAAAATATTAATCATCTCTTTATTTTGTGTTTTTC

Network for GWHGAAEX004345

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04031.12	Las1	19	172	8.60E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006364	Biological Process	rRNA processing
GO:0004519	Molecular Function	endonuclease activity
GO:0090730	Cellular Component	Las1 complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	79.160
SRP064423	SRR2545915	Juvenile tuber	75.490
SRP108465	SRR5643513	five period of Gastrodia elata	40.730
	SRR5643514	five period of Gastrodia elata	39.020
	SRR5643515	five period of Gastrodia elata	39.250
	SRR5643524	five period of Gastrodia elata	37.900
	SRR5643525	five period of Gastrodia elata	43.340
	SRR5643528	five period of Gastrodia elata	34.790
	SRR5643658	five period of Gastrodia elata	48.120
	SRR5643659	five period of Gastrodia elata	65.120
	SRR5643660	five period of Gastrodia elata	80.450
	SRR5643661	five period of Gastrodia elata	60.390
	SRR5643662	five period of Gastrodia elata	53.860
	SRR5643663	five period of Gastrodia elata	69.310
	SRR5643664	five period of Gastrodia elata	67.440
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	55.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	53.690
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	50.710
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	66.270
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	64.710
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	80.740
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	62.260
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	66.120
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	47.710
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	53.410
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.050
SRP279888	Gastro	Gastrodia elata tuber	102.80
	Juven	Juvenile tuber	48.63
	Mother_Gastro	Mother tuber of Gastrodia elata	90.22
	Mother_Juven	Mother tuber of Juvenile	41.24