Detail information of GWHGAAEX004348/evm.TU.scaffold_148.66
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|325109314|ref|YP_004270382.1| | 2.00E-164 | glutamate dehydrogenase [Planctomyces brasiliensis DSM 5305] |
| KOG | KOG2250 | 0 | Glutamate/leucine/phenylalanine/valine dehydrogenases |
| nr | gi|224134280|ref|XP_002321781.1| | 0 | hypothetical protein POPTR_0015s12250g [Populus trichocarpa] |
| Swissprot | tr|Q38946|DHE2_ARATH | 0 | Glutamate dehydrogenase 2 |
| trEMBL | tr|B9ICE5|B9ICE5_POPTR | 0 | Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185} |
| TAIR | AT5G07440 | 0 | glutamate dehydrogenase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000147 | 1305594 | 1313811 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004348
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02812.17 | ELFV_dehydrog_N | 33 | 159 | 3.00E-50 |
| PF00208.20 | ELFV_dehydrog | 176 | 408 | 1.40E-75 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0006520 | Biological Process | cellular amino acid metabolic process |
| GO:0016639 | Molecular Function | oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 49.580 |
| SRR2545915 | Juvenile tuber | 30.340 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 51.040 |
| SRR5643514 | five period of Gastrodia elata | 27.690 | |
| SRR5643515 | five period of Gastrodia elata | 25.400 | |
| SRR5643524 | five period of Gastrodia elata | 26.740 | |
| SRR5643525 | five period of Gastrodia elata | 79.670 | |
| SRR5643528 | five period of Gastrodia elata | 200.450 | |
| SRR5643658 | five period of Gastrodia elata | 143.660 | |
| SRR5643659 | five period of Gastrodia elata | 9.040 | |
| SRR5643660 | five period of Gastrodia elata | 10.960 | |
| SRR5643661 | five period of Gastrodia elata | 8.180 | |
| SRR5643662 | five period of Gastrodia elata | 10.430 | |
| SRR5643663 | five period of Gastrodia elata | 7.570 | |
| SRR5643664 | five period of Gastrodia elata | 7.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 37.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.730 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 30.860 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 44.650 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 79.090 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 115.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 42.280 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 111.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 37.180 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.740 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.41 |
| Juven | Juvenile tuber | 38.62 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 560.97 | |
| Mother_Juven | Mother tuber of Juvenile | 172.58 |