Detail information of GWHGAAEX004349/evm.TU.scaffold_148.67


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|271967988|ref|YP_003342184.1|3.00E-73amino acid transporter [Streptosporangium roseum DSM 43021]
KOGKOG12860Amino acid transporters
nrgi|695071850|ref|XP_009383017.1|0PREDICTED: cationic amino acid transporter 6, chloroplastic-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q9LZ20|CAAT6_ARATH0Cationic amino acid transporter 6, chloroplastic (Precursor)
trEMBLtr|A0A061G4V0|A0A061G4V0_THECC0Cationic amino acid transporter, putative {ECO:0000313|EMBL:EOY24172.1}
TAIRAT5G047700cationic amino acid transporter 6

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000014713663641369460-
Transcript Sequence

Network for GWHGAAEX004349

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13520.5AA_permease_2604906.50E-48
PF13906.5AA_permease_C5015497.60E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0055085Biological Processtransmembrane transport
GO:0022857Molecular Functiontransmembrane transporter activity
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms14.180
SRR2545915Juvenile tuber10.300
SRP108465SRR5643513five period of Gastrodia elata10.460
SRR5643514five period of Gastrodia elata11.680
SRR5643515five period of Gastrodia elata10.730
SRR5643524five period of Gastrodia elata10.130
SRR5643525five period of Gastrodia elata10.460
SRR5643528five period of Gastrodia elata10.970
SRR5643658five period of Gastrodia elata12.090
SRR5643659five period of Gastrodia elata12.350
SRR5643660five period of Gastrodia elata9.800
SRR5643661five period of Gastrodia elata16.350
SRR5643662five period of Gastrodia elata21.410
SRR5643663five period of Gastrodia elata12.200
SRR5643664five period of Gastrodia elata18.660
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_126.850
SRR6049655Rhizomagastrodiae_C368-T10_good_114.350
SRR6049656Rhizomagastrodiae_C368-T07_good_119.470
SRR6049657Rhizomagastrodiae_C368-T07_good_125.400
SRR6049658Rhizomagastrodiae_C368-T04_good_126.720
SRR6049659Rhizomagastrodiae_C368-T04_good_127.560
SRR6049660Rhizomagastrodiae_C368-T01_good_123.960
SRR6049661Rhizomagastrodiae_C368-T04_good_127.180
SRR6049662Rhizomagastrodiae_C368-T01_good_121.990
SRR6049663Rhizomagastrodiae_C368-T01_good_122.550
SRR6049664Rhizomagastrodiae_C368-T10_good_120.070
SRR6049665Rhizomagastrodiae_C368-T10_good_120.070
SRP279888GastroGastrodia elata tuber 16.54
JuvenJuvenile tuber21.48
Mother_GastroMother tuber of Gastrodia elata 26.08
Mother_JuvenMother tuber of Juvenile 19.14