Gene detail

Detail information of GWHGAAEX004352/evm.TU.scaffold_148.70

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0048	6.00E-101	Transcription factor, Myb superfamily
nr	gi\|672142431\|ref\|XP_008795071.1\|	0	PREDICTED: myb-related protein 3R-1-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9S7G7\|MB3R1_ARATH	2.00E-101	Myb-related protein 3R-1
trEMBL	tr\|V4WBV5\|V4WBV5_9ROSI	5.00E-178	Uncharacterized protein {ECO:0000313\|EMBL:ESR63874.1}
TAIR	AT4G32730	6.00E-101	Homeodomain-like protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000147	1494506	1545624	+

Transcript Sequence
>GWHTAAEX004352 CAAACGTTTAGCTGTTACAGAACGACAAACGCCGCTAGCAGCTTTGTCGCTAAAAAAATTCAAAACCGAAAGAACTTTAGGTTATAGCTTTTTTTCCCTGCGATCTTCTCTCCCGCGATTCCTCTTCCCCCACTCCTTCGGATTAGTTTTAATGGATTAGATCTCAAACAGGCGCTAAAGCTATCCAACGAGGCCTCTCTATATGATGCTTCGGAAGCACAGTAACACGGAGATCTGGTCAGCAACTTGCCAGCACCTATCTGAAATTGATGGGAAGTGTGAAGAGAAAGAGCGCAGGGAGAGCTGAAGCTGGCCTACCTGCTACCGTCCAAGATGACAGAATTGGGTGTTCTTCTGCAACGATCCCAGATGGAACGGGAGAACCATCAAGTTCTACATCTCTTATAGATGGGAGTGACTGCGACTATCCCAGGAAACAACTGGCTCTGCATGGAAGGGTAACTGGCCCAAAAAGGAGATCTACCAAGGGACAATGGACTCCTGAAGAGGATGAAATTCTATGCAATGCTGTGAATCATTTTCAAGGAAAAAATTGGAAAAAGATAGCGGAATGCTTCCCAGATAGGACTGATGTTCAGTGCTTGCACAGATGGCAGAAGGTTTTAAATCCTGCTCTTGTAAAAGGGCCATGGTCCAAGGAGGAAGATGAAATTATCATTGAAATGGTAAACAAGCTTGGACCGAAGAAATGGTCAACTATTGCACAAGCTTTGCCTGGACGCATTGGAAAGCAATGTCGAGAGAGGTGGCATAATCATCTTAATCCTGCAATCAACAAAGAAGCGTGGACTCAGGAAGAGGAGATAACCCTTATTCAGGCCCACCAAATTTATGGAAATAAGTGGGCAGAATTGACAAAATTTTTACCTGGCAGGAGTGACAATTCGATAAAAAACCACTGGAATAGTTCTGTCAAGAAAAAATTGGAATCATACATAGCTCAAGGTCTTGTCGGAAAGTATTTAGGTCCACCAAATGCTCCTTCTACCACCACTCTAACAGCCCAGCTGAAGAGTCGTGACAATGGCACTAAAAATAAACCTGACATGGAAGATTCCTCTGAATGTAGCAGTTCGGCTTTGGTAACTTCTTCTCAATCTGAATGTGAAATTGCAAATCCAGTTACAATGCTTAGAGATCAGAAGCAAGGGGTGGGTGCCATAAAAAAAGAGGTCACTGATTCACGTTTGCCTGGTTACTCCATTGAATATCATGGCTCAGAGGAAGCTACATTCAGTGTCTCTAAAGTGCACTGTGCTGAAGCGTTTTCTGAAGTGGCCTCACCTAGGAACTTGTTACAAAATGCTCAAGGACCAGGAAATGAGATTGTGAAGCTTTCCATGATTGATTCCAATGATAACAACCACGTGGAGACAGATAATTTACTACACAAATCAACATTATTGGGTAACTCTATCTCTAGTGATGGTACTGGACTTGAGAACAATGATAAATCTGGTATCTCTATACATATTGGCTGCGATGACTATGCTGCTACTAACTGTTGCAAAGCTTCTATTCATAGTTCCGAAGGTTCCATGAATTTCACTCAATGTTCATACCCCATATTTCCCTTAAGTTCGGTAGATAAGCATGGAATTCAGTGCTGTCAAAATTTGACGACTGTTCCCTCATCTTTTATATGTCCTAGTGTTAATGTCGAAATTCAAGACTTGCTGTGGAAGCTGCAAAATACTGGATCTGTTGCAAACTTATTTTTTGATGTTTGTAATTCTGGTTGTCCTATACCTTCTGTTCCTGAAGCAAGGACATCAAGTCATGAGACTATAATAGACCAGCAAACGGAATGTCAAGTCCCGAAGGATGTAAAACATGGTGAAGAAGAAACACCAACAAAGACAATCTGTGGCAATACAGCCAGGAATGTTTCTCCTTTGAATGAGCTGAATGCCAAATTTGGAAATGTTTTGGAATGTCTGTTTCAGGAGGATAGAAAGCTGAGTGTAGATGAAACACCAACTAAGACAAGAAGCTGTGACAGTACAACGAGGAATATAACTGTTACCGATGAACAGAAAGTTGAACTTGAAAATATTTTGGATCCTGGAATTATATCTTTTACTGATGAGATGAAGGATATTCAGTCTGAAAATTTCTTGGAGTCTGGATCATTATTTTATGAGCCTCCACGCATTCAGAACTTGGAATTTCCTTTTGTTTGTTGTGACATTGTGTCCAGTGACCATCAGCAAGCCTATAGTCCACTGGGCATTAGGCAGCTGATGATGTCTTCAGCAGCATGCAACTTATGGGACTCTCCTTCTCGCGATGATAATCCTGATGGCATTTTGAAACTTGCTGCCAAAAGCTTCATATGTACTCCGTCCATTATGAAGAAAAGACAGCGAGAACTATTGTCTCCTTTGTCAGAAAGGGGAACTGATAAGAAATTTGGTGTTGACATTAACCAAGGGCTATTTTTTATGCCTTCAAAAAAAGGGGATGGGTCTTGTATGGTAGATATGATAGGTGAAATTGATACTGAGGACATTTGTTTGTCTTTAGCAGATGATGTTCTTGAATCACCCAATTTATACGAAAAACATGATACTGGTAAACAAAATGAGGATTTGTGTGCCAAACTTACTCAGACAAGTGTCTCAAGTAAAACATCCAGGGCAAGCAATCATCTACAGAATATTGAGAACTGGAGATCTGAAGCTAAAGTGCTTTTTGATGTTAGTTCAGAAATGAAAGAATCTCAATCTAACTCAGTATTAGTGGAGCGTAATGGTGCTTATTTGGATTCCTTATCTGGCTGCTCAGCCTTTATTTCTCCCGGTGCTTGTGGAACCAAACACATGGATTGCTCTATTCAAACTGCTTCCTTACAGTATCCTCCATCATCAAAGAAAGCACAAGTTGTTGTTGAGAACGTCAATCCATCCATCGATGCTGAGCATGAAATTTTAAATATATTCGCTGATACTCCTGGTATCAAAAGAGGATTAGAGTCTCCTTCAGCATGGAAGTCACCTTTTTTTTTTAACTCATTTCTTGGAGCTGATATGGCATGTGAGGACTTAAGATACTTTTTGAGCCCTGGTGAAAGAAGCTATGATGCCCTTGGCCTTATGAAACAATTAAGTGAACAAAATGCTGATGTAATTGCTGACGCTCGAGAATTGTTATCCAATGGCGGCCAAAAGTTGAACTTTGATAATATTCAGTTCAACAGTTCTTTACAAGATAATCCAGATTCTGCAAAAGAACAGGAAAACCTCATTCCTATGCCTTCAAATGTTGTGGCTGAAGCGCGCGCTCTTGACTTTAGTGGATGCTCCACCCCTCGCGAGAAAGCCAGGAATAAGAAAGTGAAGCTTCTTTCTGGCACTACACAAACCAGCAGCCCAGCCTCTCACCTTCTTAGAAGCTGTCGATAGCCCGCCCTGCACACCCGCCTGCCCGCCTGCCCGCCCGCCTGCCCGCACGTATAATGATGCCCTTACTCTATTCAAAAAATAAATTATTACTATTATTATCAATAGTTTTTTTTTTGTTACCTTTTTCACCCCACATTTTTTGTATTTGTTCTCTGCCATTGCTTGTCTTTGTACGAGTTCAACGAGGTTCAAAGCATATTATTTTGGTAAAAGTTGCATTTTCTTCCATTCAATTCTTGATCATGCTGTGACTCATTTGCATACTATGTACGTTTTTTTGGTTGTATTTTGAGAGGTGGCTCCATCGTACACCCATTTCTGGGGCTTTTGATTTAGCTTAAGACAACTTAATCGTCTTGTTAAAATGGGTTAATTAAGATACATTAGGCTTAAGTCGGGTTGTATTGTGGTTTAAGTATACATGTTTTGAAGCTAAATAGTACTTACTAATGTTGCTAATCATTTGCATTGTTGTTACTGTGTTAAAAACTTGTGTTAGTTATATATTCA

Network for GWHGAAEX004352

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.30	Myb_DNA-binding	73	119	3.70E-16
PF00249.30	Myb_DNA-binding	125	171	1.60E-17
PF00249.30	Myb_DNA-binding	177	220	1.10E-13

Protein Sequence

>GWHPAAEX004352
MGSVKRKSAGRAEAGLPATVQDDRIGCSSATIPDGTGEPSSSTSLIDGSDCDYPRKQLALHGRVTGPKRRSTKGQWTPEEDEILCNAVNHFQGKNWKKIAECFPDRTDVQCLHRWQKVLNPALVKGPWSKEEDEIIIEMVNKLGPKKWSTIAQALPGRIGKQCRERWHNHLNPAINKEAWTQEEEITLIQAHQIYGNKWAELTKFLPGRSDNSIKNHWNSSVKKKLESYIAQGLVGKYLGPPNAPSTTTLTAQLKSRDNGTKNKPDMEDSSECSSSALVTSSQSECEIANPVTMLRDQKQGVGAIKKEVTDSRLPGYSIEYHGSEEATFSVSKVHCAEAFSEVASPRNLLQNAQGPGNEIVKLSMIDSNDNNHVETDNLLHKSTLLGNSISSDGTGLENNDKSGISIHIGCDDYAATNCCKASIHSSEGSMNFTQCSYPIFPLSSVDKHGIQCCQNLTTVPSSFICPSVNVEIQDLLWKLQNTGSVANLFFDVCNSGCPIPSVPEARTSSHETIIDQQTECQVPKDVKHGEEETPTKTICGNTARNVSPLNELNAKFGNVLECLFQEDRKLSVDETPTKTRSCDSTTRNITVTDEQKVELENILDPGIISFTDEMKDIQSENFLESGSLFYEPPRIQNLEFPFVCCDIVSSDHQQAYSPLGIRQLMMSSAACNLWDSPSRDDNPDGILKLAAKSFICTPSIMKKRQRELLSPLSERGTDKKFGVDINQGLFFMPSKKGDGSCMVDMIGEIDTEDICLSLADDVLESPNLYEKHDTGKQNEDLCAKLTQTSVSSKTSRASNHLQNIENWRSEAKVLFDVSSEMKESQSNSVLVERNGAYLDSLSGCSAFISPGACGTKHMDCSIQTASLQYPPSSKKAQVVVENVNPSIDAEHEILNIFADTPGIKRGLESPSAWKSPFFFNSFLGADMACEDLRYFLSPGERSYDALGLMKQLSEQNADVIADARELLSNGGQKLNFDNIQFNSSLQDNPDSAKEQENLIPMPSNVVAEARALDFSGCSTPREKARNKKVKLLSGTTQTSSPASHLLRSCR

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	39.080
SRP064423	SRR2545915	Juvenile tuber	42.440
SRP108465	SRR5643513	five period of Gastrodia elata	27.010
	SRR5643514	five period of Gastrodia elata	25.460
	SRR5643515	five period of Gastrodia elata	25.050
	SRR5643524	five period of Gastrodia elata	25.220
	SRR5643525	five period of Gastrodia elata	16.880
	SRR5643528	five period of Gastrodia elata	16.960
	SRR5643658	five period of Gastrodia elata	20.730
	SRR5643659	five period of Gastrodia elata	27.690
	SRR5643660	five period of Gastrodia elata	30.520
	SRR5643661	five period of Gastrodia elata	23.590
	SRR5643662	five period of Gastrodia elata	27.570
	SRR5643663	five period of Gastrodia elata	28.300
	SRR5643664	five period of Gastrodia elata	24.490
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	35.870
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.180
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.990
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.940
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	37.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	42.860
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	41.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	37.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.710
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	31.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	25.960
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	25.960
SRP279888	Gastro	Gastrodia elata tuber	31.33
	Juven	Juvenile tuber	58.52
	Mother_Gastro	Mother tuber of Gastrodia elata	27.60
	Mother_Juven	Mother tuber of Juvenile	46.81