Detail information of GWHGAAEX004354/evm.TU.scaffold_148.72
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|337745723|ref|YP_004639885.1| | 2.00E-46 | thermophilic beta-amylase [Paenibacillus mucilaginosus KNP414] |
| nr | gi|672142032|ref|XP_008794866.1| | 0 | PREDICTED: beta-amylase 3, chloroplastic [Phoenix dactylifera] |
| Swissprot | tr|O23553|BAM3_ARATH | 0 | Beta-amylase 3, chloroplastic (Precursor) |
| trEMBL | tr|S4SKD9|S4SKD9_ACTCH | 0 | Beta-amylase {ECO:0000313|EMBL:AFO84076.1} |
| TAIR | AT4G17090 | 0 | chloroplast beta-amylase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000147 | 1560956 | 1563424 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004354
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01373.16 | Glyco_hydro_14 | 91 | 252 | 9.90E-56 |
| PF01373.16 | Glyco_hydro_14 | 271 | 532 | 1.40E-82 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH14 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01177 | E3.2.1.2 | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Starch and sucrose metabolism | map00500 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000272 | Biological Process | polysaccharide catabolic process |
| GO:0016161 | Molecular Function | beta-amylase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.040 |
| SRR2545915 | Juvenile tuber | 39.610 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.780 |
| SRR5643514 | five period of Gastrodia elata | 56.580 | |
| SRR5643515 | five period of Gastrodia elata | 42.230 | |
| SRR5643524 | five period of Gastrodia elata | 36.630 | |
| SRR5643525 | five period of Gastrodia elata | 169.910 | |
| SRR5643528 | five period of Gastrodia elata | 229.290 | |
| SRR5643658 | five period of Gastrodia elata | 322.330 | |
| SRR5643659 | five period of Gastrodia elata | 19.900 | |
| SRR5643660 | five period of Gastrodia elata | 16.080 | |
| SRR5643661 | five period of Gastrodia elata | 22.950 | |
| SRR5643662 | five period of Gastrodia elata | 14.820 | |
| SRR5643663 | five period of Gastrodia elata | 20.060 | |
| SRR5643664 | five period of Gastrodia elata | 29.580 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 41.070 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.710 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 49.500 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 41.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 53.790 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 60.910 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 61.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 47.900 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 55.160 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 101.450 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 54.940 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 54.940 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 36.10 |
| Juven | Juvenile tuber | 15.83 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 338.93 | |
| Mother_Juven | Mother tuber of Juvenile | 118.77 |