Gene detail

Detail information of GWHGAAEX004360/evm.TU.scaffold_148.77

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672116601\|ref\|XP_008781469.1\|	PREDICTED: uncharacterized protein LOC103701250 [Phoenix dactylifera]
Swissprot	tr\|F4IP69\|MIP3_ARATH	Sec1 family domain-containing protein MIP3 {ECO:0000305}
trEMBL	tr\|I1QY17\|I1QY17_ORYGL	Uncharacterized protein {ECO:0000313\|EnsemblPlants:ORGLA11G0040900.1}
TAIR	AT2G42700	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000147	1881509	1899366	+

Transcript Sequence
>GWHTAAEX004360 GCTTCTCCTCGCCTCGCCGATTTCATCAACGCAGGTGATCTGCCTTAGCTTCATCTCGCCTCGCCGATCTCGTCAACGCAGTTTGATTGTTCCCCACTGAATTTTTTCTTGGCTCCACCCTTGATTCTTTGTGCCTCAACTATTTTTTAGTAGCTGGCCTATGGTTTGAAGAAATCATACAAGTCTGAACTATCGAGAAGCTGGACGGCCTGGCCTATTCTTCTTGACCGAACTGTAACTACCAAACTCATTTGCATGGGTTCAATTGATTTGATTAGATCGTGCATTGATTCTATTCATGAGATTTCGGATGACGTTGTAGACTCTGTTCTTTACCTTGATGCTGCTAGTTTTGAGGCTTTCCAATTCGTTGATGCATTTCCACTTTTCTTGGAACTTGGGGCCCGTGCCATTTGCAGCTTGGAAAGTATGTCCTCTCTAGACATTACTGCACATTGGAATTTAGATTTTGTTCCTGTAAAGATGGCCGTTATCACATCTCGCCTGCTTAGCGATGCACACCGGTTTATTTTACGCTGCCTGCTCACTCATCAAACAATTCTTCATTGTGTTATATTTACATCCATTTCAGAGATAGCCCACTCTGCATATGTTGATTCACCACTTGGACCGGATGCGTTTCATGAATATGAGTCTTTACTCATCCAAGATTATGAAGAGATGGCAAAGAAGAATACGAGGAGTGAAAGGCATTCACAACTTAACAATGAGATACAACAGGTTGATACATTGTCATCTATGGATGATTGTTCCTCAAAGACGGCATCTGGAGCGGGTTGTGAATCACATATGAAGTCTGTTTCTGGCGAAAGAGAGTCATTTGATGATTCTAAGCCTATAGAAATCAACAGCCGTGCAAGATTACGGGTCATTGTGCGCCATTACCCCATGCTACTGTGTCCACTTTCAGCCCGAGCCTTTATTTTTCCTTCTGAAGCGGCAGTTGCAGAGGCATGCTTGTCAAACAACAATGAGAGTTCGCTTAGCCCTGGCCTACCTTCAATTTGCACTGGGGCAGCTTCTGACATTGAGGATGTTCCTCCAGGAGTAACTCTCACAGCTCATTTTCTCTATAATTTAGCTGCAAAGATGGATTTGAAGTTGGAAACATTTTCCCTTGGCGATACGTCGAAAGCCATTGGCAAGATATTGACTGACATGTCTAGCCTTTATGATGTTGGACGCCGCAATCGTAGATCCGCCAGTTTATTGCTCATAGACCGTACTCTCGATCTTCTCACACCTTGCTGCCACGGCGACTCATTTCTTGATAGGATGCTTTCCTCTTTGCCTCGCAGGGATAAATCTGCGAGAAACTCCTATTCCTCGATCAAAAATCTTCATGTTGATGTGCAGCGTGCAGCACTTGATGTAAGAACGCCCTTCTCAATGATGTTTAGGGACCAAGATCTGAACTTGGCTACCCGTAAGTTAGAAGATAATATAAAAGCTTTCATGTCGGGCTGGAATAACAAGGATGATCATGATTCATACTCACTGAGTGGAAGCATTCTATCCAATTATACCGGAACACATTACTTGGAAGCACTGTTAGATAGAAACGTTAAAGATGGGATCCTCCTTGTTAAAAAATGGCTAATGGAAGCTTTTCAGCGTGAAAAAGTGCCTTTGAAAGGTCTCATTGGTTCTACTGTGCTTTCCAAGCTTCATGCTATAGTCAAAAAACTAGTTCCAGATCAAATTTCGCTGCTCAGGAACAGAGGGATCATCCAGCTGGCCTTGACAGCTGAAATGGCCTTGAACGAGCCTCATAGTTCCAGGTGGGACGCATTTGTAAGTGTCGAGAGAATACTGAATGTTGTTTCGATAGACAACAGCCAAAACTTGCCGAGCCAAATTCGGGACCTCATTAATTCAGAATCACGTGCGGGCCTTCTCTCTTTTGAGGATGGTTTGCTTCTGTCAATAAGGGGATATATTTTGGCGGGGGAAAATGTCCGAGTATCCGAATCCGCCAGCCCTTTCACGTGGGAGGAAGAACGTTCGTTGAAGGAGGCTGTCGTAGATGCCATTCTTCAAAAGCCGACAATGGCAAAGCTGCATTATCTTCAAGGCCTGGAGAAAGATCTCCAAGCTAAAGCGATGAATGAAGAAACAAAAGAGGATGATTTTGATGATCAGTGGGGAGACTGGGACGATGAAGAAACTGATCATCGGAACAATGAATCATATGGGGATGTGCAGCTCAAGCTAGAACTGCGGGATCGGGTTGATCAGCTCTTCAAACTGCTCTGCAAGTTATCTGGATTGAAGTGGAGAAACCAGTCTTTGTTTGAAGGTTTGCTGGCATCCCCCAGCATCTACGGTGATGATCCTTATGCAAGGAAAGGGCTGATATATAAGCTTGTAGCTAAGGTAATGTCCAGGCATGATACGCCCCCAGGGCTTGAATACCACTCCTCAGCAATGGGCCGATTTCTTAAGAGCGGATTTGGTAGGCTTGGCATTGGGCAGGCAAAGCCTCGTCTGGGAGATCAAAGTATTCTTCTAATTTTTGTTGTGGGAGGCTTAAACAGCCTTGAGATTCGTGAAGCCATGGAAGCTATTTCAGATAGCAGTAGACCCGACGTGGAACTAATGATTGGTGGCACGACTCTTCTAACTCCAGATGACATGTTTGATTTATTGCTGGGATCTTCTAGCTATATTTAATTTTATACAGCATTCTTCGGGAAGAAGAGTAGTATGATAGAGTTTAGGGTTTATGATGCTCAAATAAGAGCTCAATTTTTTTTTTTATATAGAGAAATGTGTTTTTAAAGGAGGGAGAAATGAGTGGTTTGTATGCAAGTTTTTCGAACTAGTCTCCCTTTTACATTTAGGATTTATTTAAATTTTGGAGAAATTGGAGCAGTGTAGCATGTATCCCAATTGAATTTAAAAGCTGCTTCAAATTGAAAATATATGCTTATATGGAAACTACCAATTATTGAGCTGTG

Network for GWHGAAEX004360

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016192	Biological Process	vesicle-mediated transport
GO:0006904	Biological Process	vesicle docking involved in exocytosis

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.980
SRP064423	SRR2545915	Juvenile tuber	22.250
SRP108465	SRR5643513	five period of Gastrodia elata	17.660
	SRR5643514	five period of Gastrodia elata	16.810
	SRR5643515	five period of Gastrodia elata	17.680
	SRR5643524	five period of Gastrodia elata	16.470
	SRR5643525	five period of Gastrodia elata	15.370
	SRR5643528	five period of Gastrodia elata	22.990
	SRR5643658	five period of Gastrodia elata	16.690
	SRR5643659	five period of Gastrodia elata	20.000
	SRR5643660	five period of Gastrodia elata	21.590
	SRR5643661	five period of Gastrodia elata	20.290
	SRR5643662	five period of Gastrodia elata	19.170
	SRR5643663	five period of Gastrodia elata	21.920
	SRR5643664	five period of Gastrodia elata	17.390
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.010
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.250
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.470
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.680
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.220
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.590
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.100
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.750
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.220
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.290
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.290
SRP279888	Gastro	Gastrodia elata tuber	18.16
	Juven	Juvenile tuber	22.79
	Mother_Gastro	Mother tuber of Gastrodia elata	20.29
	Mother_Juven	Mother tuber of Juvenile	30.39