Gene detail

Detail information of GWHGAAEX004361/evm.TU.scaffold_148.78

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|302389088\|ref\|YP_003824909.1\|	2.00E-180	GDP-mannose 4,6-dehydratase [Thermosediminibacter oceani DSM 16646]
KOG	KOG1372	0	GDP-mannose 4,6 dehydratase
nr	gi\|743854664\|ref\|XP_010941001.1\|	0	PREDICTED: GDP-mannose 4,6 dehydratase 1-like [Elaeis guineensis]
Swissprot	tr\|P93031\|GMD2_ARATH	0	GDP-mannose 4,6 dehydratase 2
trEMBL	tr\|I1J8M6\|I1J8M6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G37270.1}
TAIR	AT3G51160	0	NAD(P)-binding Rossmann-fold superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000147	1905744	1926505	+

Transcript Sequence
>GWHTAAEX004361 CTCAACTTGAATTAGCCCATCTCAGATATTGCAGCTGCCAAACGGCGGTCGGAATGAGGAAATAAACGGCCGGTTTCGAGACATTAAAAGGCGCGCCCTCCTCTCCGCTCAACCCAAGAACACCAGAATCGTCTTTCTCGGCATTCCAATTCATGGCCGGCAACTCCAAATCCAACGATTCGGCAGATGGGTCGATTTCCTCAAACGGAGAAGTATCCGCGGCAACTCAGATCCCAGCATCCCTCTCCCCTCCCCGCAAAGTCGCCCTCATCACTGGAATCACAGGGCAAGACGGATCCTACCTGACGGAGTTTCTCCTCGGCAAGGGCTACGTCGTCCATGGCCTCATCCGCCGATCCTCCAATTTCAACACCGCTCGCCTCGACCATCTCTACGTGGATCCCCACAACTCGCAAAAAGCCCTCATGAAGCTCCATTACGCCGACCTCTCCGACGCTTCCTCCCTCCGCCGAAGGATCGATTCCATTCTTCCCGACGAGGTTTACAATCTTGCCGCTCAATCTCACGTCGCCGTCTCCTTCGAGATCCCCGATTACACCGCCGATGTCGTTGCCACCGGCGCTTTGCGCCTCCTCGAAGCCGTTCGATCATCCTCCAAGAAGGGGATCCGATACTATCAGGCCGGATCCTCCGAGATGTTCGGATCCACGCCTCCACCTCAGTCCGAGACCTCCCCTTTCCACCCCCGATCGCCTTACGCCGCAGCTAAGTGCGCCGCGCACTGGTACACCGTCAACTATCGTGAGGCTTACAGCCTCTTCGCTTGTAACGGCATCCTCTTTAATCACGAGAGTCCTCGCCGTGGGGAAAATTTCGTCACCAGGAAGATCACCCGCGCGGTTGGCCGAATCAAGGTCGGTTTGCAGACCAGGCTTTTCCTGGGAAACCTCTCCGCGGCCAGGGATTGGGGCTTTGCTGGCGATTACGTTGAGGCCATGTGGATGATGCTGCAGCAGGATGAGCCGGGGGATTATGTCGTGGCTACTGAGGATTCACATTCTGTGGAGGACTTTCTTGAGGAGGCATTTGGGCACGTGGGATTGAATTGGAGGGATCATGTAATGATTGATGAGAGGTACTTCAGACCCGCTGAAGTTGATAGTTTAAGAGGGGATTCAACCAAGGCAAGGAAGGCTCTTGGTTGGAAACCTAAGGTGGGGTTCAAGGATCTTGTCAGGATGATGGTGGACAGTGACATTGAGCTTGCTAGGAGGGAGAAGGTGCTCGTAGATGCTGGGTATATGGATGCTCAGCAGCAACCCTAGGGGACTTAACTGTCTTTATTGCAGCCGGAGCAGAAATTCTACTATCCAAGGGTTGGTGTTGCTCTAGCTTGCTTTCGGCTTTTCTTGGCCCTTCAGATGGTGTTTTGTCGGAAGCTTTATATTGCATGGAGATCTGGGCGCGCCGCACACACACAGATCGGCTTTGCTCATGTTTTCAACTTTCCTGTTTTCCTTTCAATTATGTTTCTTTCGGAACCTTAATTTGACAAAAGATCTAGGTATGCACACTCACAGGCTCGAGACAGTTTCGGCTCTACTGTTTCATTCATGATTGTGTTTCGCTGAGAACCACGTTTTCTTCAGAATATCTAGGTGCGCACGCGCACATTCAGGTCACTGTTACCCGAGCCCGCTTTCAGCTCTCAGACTTCCCCCCTGATTATGTTTCACCAAAAGCACTATTTTTCCTCGGTTGAAAATTGATGTGGCAACGAAGAGCTTGATCTAGTCCTCGGTTGCCCTCATTTGTGTGGAGTTGAACATCATCAAATGACCATTTAAATCAGGCCTTTATTGGTATTGATGCTTTGGGTTTTAGCAGTTGGTCATTTTGAGAATTTGCGACAGTTTTGTTTGGATTGCAAGTTTGGGCCATGCAATGGATACTTATTTTAAACTTCATCTAGAATATTTCAAAAAGTTGTGAAAATTTTCATCTATTAGCCCTGTGTTCTGCCATTTTTATGTAGGGCTTGATATTGTCATTATCTCGTTCTGTTGTTTGAAATTTTATTAAAAAAAATATATATTCCAAATTGACAGTAAGGCTCAACTATCAAATCACACCTCAACCATCAAAACTCCTAAATCAACAAGGCTCCTCAATCATGTTGTAGGCTGATGTTTGATTACATTTCTCCCTTTCTCAATTAAAAAT

Network for GWHGAAEX004361

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16363.4	GDP_Man_Dehyd	39	351	2.70E-133

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01711	gmd, GMDS	Metabolic pathways	map01100
		Fructose and mannose metabolism	map00051
		Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0019673	Biological Process	GDP-mannose metabolic process
GO:0008446	Molecular Function	GDP-mannose 4,6-dehydratase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	35.110
SRP064423	SRR2545915	Juvenile tuber	23.290
SRP108465	SRR5643513	five period of Gastrodia elata	41.190
	SRR5643514	five period of Gastrodia elata	40.490
	SRR5643515	five period of Gastrodia elata	31.490
	SRR5643524	five period of Gastrodia elata	37.190
	SRR5643525	five period of Gastrodia elata	28.070
	SRR5643528	five period of Gastrodia elata	34.230
	SRR5643658	five period of Gastrodia elata	22.020
	SRR5643659	five period of Gastrodia elata	36.900
	SRR5643660	five period of Gastrodia elata	40.470
	SRR5643661	five period of Gastrodia elata	40.920
	SRR5643662	five period of Gastrodia elata	43.160
	SRR5643663	five period of Gastrodia elata	37.140
	SRR5643664	five period of Gastrodia elata	34.230
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	48.680
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	67.160
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	48.380
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	49.160
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	51.860
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	63.540
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	50.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	52.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.760
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.910
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	53.970
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	53.970
SRP279888	Gastro	Gastrodia elata tuber	28.25
	Juven	Juvenile tuber	56.10
	Mother_Gastro	Mother tuber of Gastrodia elata	26.30
	Mother_Juven	Mother tuber of Juvenile	37.92