Gene detail

Detail information of GWHGAAEX004362/evm.TU.scaffold_148.79

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|42524005\|ref\|NP_969385.1\|	1.00E-175	multidrug ABC transporter permease/ATPase [Bdellovibrio bacteriovorus HD100]
KOG	KOG0054	0	Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily
nr	gi\|672122684\|ref\|XP_008784678.1\|	0	PREDICTED: putative ABC transporter C family member 15 [Phoenix dactylifera]
Swissprot	tr\|Q9M1C7\|AB9C_ARATH	0	ABC transporter C family member 9
trEMBL	tr\|K3Y4N5\|K3Y4N5_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si009173m}
TAIR	AT3G60160	0	multidrug resistance-associated protein 9

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000147	1959562	1977004	+

Transcript Sequence
>GWHTAAEX004362 AAATTTCTAAAATTCTTTATAGAGGGTACAACTTTTACTCTTTCTGATAATACGGCCAATAAAAGAACCCTACATGCACGTTGCCTTGACGACCTGACGACTGATGAGTGTGGCCCAGAGCGGGAGCGTGATAACTTACTGGTCGACTTCATGCACATAAAAGAACAAAGTTGGAGCTCAACAGACTCCTCTACAAGGTCTTGAAATAAAAATAATAAAGAAATTAGGAAATGCCAAAACTCAACAATGAATGGCCTTTAGGTGCATTAATCTATGCTGACTGCTGAGTGAGTGATGCCTACTTCTGTCTTCTCCCGCTGCATTATAATGCCTCTCGCTCCTATATCTTCTTCTTCTTCTCTCTCGTGTTTTTGCTTGCTTGATTTAACGGTCGTTTAGAGCACCGGAGAGAGAAGTTGAGCCTTTCTCGGTTTGATCTCTATTCAGCTGAAGAAGCCCAGAAAAAGAAGTCCTGGTTTTTAGTGCAGTGCTGCGAGCTTGCTGTCATGTTTGAGTTAGAAAGATTCCAGCTGACTTCATACCCAAGACAATGGTGGCAGGAGAGCTCCCCGTGTTTCTCAAAGGACATTTTCATAATCCTTAATCTCTTGCTCCTCACTGTGTTTGCAGCTCAATTCTTATTCAAAGTAATCCTACAGCTTCATGGGAGAAAACACAGGAGCATAGGGGAAGATGAACAACATTGTCTATCAGGAAAAGCTATTCCAGGAAGCGTAAGGGTGAATAAATCTTACCAGGCCAGCAAATGGTGTTGTTCAGTTGTTCTGGCTTGTCAAATTCTGGAGCTCATATTCTTCCCATCAAATGTGTTTGAAGTTCAATGCGAGCTCTTAATCTTAGTTTTATCTGAATCGATGAAGGGTCTATCAAGCATAGTAGTGCTAGCATCCATTTTCAATTTTCAGAGAAAACGGACCATCAAAATGCCATGGACAGTTAGATTATTGTGCCTAAGCATCTTCCTCCAGACTACAATCAGCTTAGTTTTCAAACTGCATTTCATCCTTTCACACAAGCTGATCTTAGGAACAGGGGACTGTTTAAATATAATCGCTCTCTTTTCCTGTGCCTGCCTAACGGCAATAATAATCAGGGGACACACAGGGATAAGTGTCACCTCAGGCAGTGTAGCAGAACCGCTGCTGATAGGCTCGGCAGAGAAGCAAACAGAAATCAAAAGACAATGCCCATATGGGATAGCAAGCCTTACTCAACTTGTTACTTTTTCCTGGATCAACCCACTGTTTTCCATTGGAATCAAGAAACCACTGGAGCAGCACGAAGTGCCTGATATTGATGTTAAAGATTCAGCAGAGTTCCTCTCTCATTCCTTCCATGAGTGCCTTGAAAGAGTGAAGGAGAAGCATGGATGGAAGACCTCGTCCGTTTACAGGGCAATGTTCTTATTTATTTGGAAGAAGGCTGCAATCAATGCTTCTTTTGCAATGGTAAGTGCCGCTTCATCATACGTCGGACCTTCATTGATAAATGATTTAGTGAGTTTTCTTGGAGGTAAAGGAAGCCACAGACTGCAAAACGGATACATTCTTGCACTAATATTTCTAAGCGCCAAGTTTGTAGAGACGGTGGCTCAGAGACAGTGGATTTTTGGAGCTCGGCAGCTCGGTTTGCGCTTGAGGGCAGCTTTGATTTCTCACATATACCAAAAAGGACTTCATCTATCGAATCAATCGAGGCAGAGCCATACAAGTGGAGAGCTAATCAACTACATGAGTGTTGACATCCAAAGGATTACAGATATCATGTGGTTTGCAAACATTATATGGATGCTTCCCATCCAGATCTTCCTGGCGATTAATGTGCTTCAAAGGAATCTCGGCTTCGGCGCTTTGGCTGGATTGGCAGCCACATTCTTTATAATGGCGTTGAATATTCCGCTCACCCAAAAGCAGAAGGATTACCAGTCCAAGATTATGGAAGCCAAAGATGATAGAATGAAATCAACAACAGAAGTTCTCAGGAGCATGAAGATTCTCAAGCTCCAAGCATGGGACATGCAGTACCTTCACAAATTGGAAAACTTGCGTACAACGGAATGCAACTGGCTATGGAAATCTCTGAGACTTCAAGCAATTACAGCATTTATCTTCTGGGGTTCGCCAACATTCATTTCAGGCATCACTTTTGGAGTTTGCATACTGATGGGTATCCCCTTGACTGCTGGGAGAGTTTTGTCTGCATTGGCGACATTCCGCATGCTACAAGAACCCATTTTTAATCTGCCTGACCTTCTTTCAGCACTAGCCCAGGCAAAAGTTTCAGCTGACAGGATAGCCTCCTACCTGAAGGAAGATGAAATAAAATCAGATGCAGTAGAAATCATTCCCAAAAATGATGCGGGGCTGGAAGTTGAAATAGAGGAAGGAGTCTTCAGCTGGGACTTGGATTCTGAATCGCCAACACTTTGTAATATAAATTTGAGAGTAAGAAGAGGGATGAAAGTAGCTATATGTGGGTCGGTCGGTTCAGGGAAGTCTAGTCTAATATCATCCATTCTTGGAGAGATGCCAAAACTGAGAGGAAGAGTGAAAATAGGTGGTTGCAAAGCATATGTTCCTCAGTCCCCATGGATATTAACTGGAAACATAAGGGAAAATATTCTATTTGGAAAACCATATGACCATAATAAGTATAAAGAAATAGTCAAGGCCTGCTCTTTAACAAAGGATTTTGAGCACTTTGCCAGTGGGGATCTAACAGAAATTGGAGAACGAGGAATAAATATGAGTGGCGGGCAGAAACAGCGTATACAAATTGCCAGAGCAGTCTATCAGGATGCTGATATATACCTTCTTGATGATCCTTTCAGTGCCCTGGATGCTCACACGGGAAACCAACTATTTAAGGAGTGCCTTCTGGGAACACTGAAAGACAAGACAATTCTTTATGTTACCCATCAAGTGGAGTTTCTTCCGACAGCAGACCTAATTTTGGTGATGCAGAATGGGAAGATCGCACAGGCTGGAAGTTTTGATGAGCTTTTGAGCCAAAATACAGGATTTGAGGTTTTAGTAGGAGCTCATAGCCAAGCTCTTCAGTCAATCTTCAATGCAGAAAGCTCAAGCAGAGCAGTTCAAACAGAGAACAGCAGCATGGCAATAAACTCAATTACCTGCGAATGTGATTTAGAAAATTCTAAAACCACTCAGCCCCAGAGTATTGAGAAGCAAGAATCTGCACAGGATCTCTCCAAAGATGTTGCTGAACGAGGAAGACTAACACAAGATGAGGAAAGAGAGAAAGGGAGTATTGGTAAAGAAGTTTACTGGTCATACCTGACTGCTGTTCGACGAGGGGCTTTAGCTCCGGTCATAATCACAGCGCAAAGCTTCTTTCAGATACTACAAGTTGCAAGTAACTACTGGATGGCATGGGCTTCCCCTCCGACAGCAGAAGCACCAGAAAAAATAGGAACTAGTTTACTTTTCACAGTATATATGATGCTTGCACTTGGGAGTGCAGTCTGTGTGTTGGTCCGGGCAATGCTAGTAGCAATAGTTGGTCTTTTGACATCACAGAAGCTTTTCAAAGGCATGCTTCACTCCCTGCTTCGCGCGCCAATGTCCTTTTTTGATTCAACACCAACAGGGAGAATCTTAAATAGGGCCTCAACGGACCAGAGTGTGCTAGACTTGGAGATAGCTGGAAAGTTAGGCTGGTGTGCCTTTTCAGTAATACAAATCCTCGGGACAATAGCTATCATGTCACAGGTTGCATGGCCAGTTTTTGCAGTATTCATCCCAGTAACAGCCATATGCTTCCGATATCAGCAATATTACATACCAACTGCAAGAGAACTTGCTCGGCTGTCAGGAATCCAACGGGCTCCAATCCTACATCATTTTGCAGAGTCACTCGCTGGAGCAGCAACTATCCGAGCATTCAAACAAGAAGAGCGCTTCACATATGCAAACGTTTGTTTTATTGACAATCATTCAAGGCCATGGTTCCACAACGTATCTTCAATGGAATGGCTATCCTTTAGATTGAATATGCTTTCCAATTTTGTATTTGCATTCTCTCTCATTTTGCTTGTAAGCCTTCCTGAAGGACTTATCAATCCAAGTATTGCAGGGCTGGCAGTAACATATGGTTTAAATCTCAATTCCCAGCTTGCAACCATCATTTGGAACATTTGTAATGCTGAAAATAAAATGATATCAGTAGAAAGAATTCTGCAATATTCACGCATCCCCAGTGAAGCTCCTTTGTTAATAGAAGAAAACCGACCATCAAAAATTTGGCCAGAATCAGGAAGTATTTGCTTCAAGAATTTGCAGGTTAGATATGCTGAGCACTTGCCTTCAGTCTTAAAAGATATCACTTGTACGATACCAGGCAGAAACAAGGTTGGTGTGGTAGGAAGAACAGGAAGTGGAAAATCAACTCTAATTCAGGCACTTTTCCGCATTGTTGAACCAAGAGAAGGAAGCATTATAATCGATGGAGTGGACATCTGCAAGATAGGTCTTCATGATTTGAGATCTAGGATAAGCATCATTCCTCAGGATCCGACAATGTTTGAGGGGACAGTGAGAGGAAACCTTGATCCTCTGGCGCAGTATTCTGATCAAAAAATATGGGAGGTATTGGACAAGTGTCAGCTAGGTGAAGTGATACGTAGCAACGACAGGAAGATGGAATCAACAGTCGTTGAAAATGGAGAAAATTGGAGTGTTGGACAGAGACAATTGTTTTGTTTGGGAAGAGCTTTGCTCAAGAGGAGCAGCATTCTTGTTCTGGATGAAGCAACAGCTTCTGTGGACTCTGCTACAGATAGAATCTTACAAGAGACCATTCGCAAAGAATTCAATGACTGTACTGTGGTTACTATAGCTCATAGGATTCACACTGTCATTGATAGTGATCTCATTTTGGTTCTTAGTGATGGAAGAATTTTGGAATATGACACGCCAGCAAAGCTACTAGAAAGGGAAGACTCATCCTTCTCAAGGCTCATAAAGGAGTATTCAATAAAATCGCAGTTATAACAAACATTATTCTATGTGATTTTGAATCTTAGGGTGAAGAAGATGATGCGGCCAACACTGGCAACCACAATAATAAATAAATCCTTCCCAAGGGGTGGTCAGCATGTGCTTTGAATCAATGATCTATAAATCCTGGTCAATAACAAGCCTTGGTTAAACTGTATTACACTTAGATATAATAAGTAATAGACCTTAGGGTGAGAGGTTTCTGAAGCGTTGCATCATGATAAACCTATATATATATATATATATAT

Network for GWHGAAEX004362

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.22	ABC_membrane	318	581	9.20E-25
PF00005.26	ABC_tran	648	781	1.20E-17
PF00664.22	ABC_membrane	982	1193	3.20E-31
PF00005.26	ABC_tran	1283	1431	3.50E-29

Protein Sequence

>GWHPAAEX004362
MFELERFQLTSYPRQWWQESSPCFSKDIFIILNLLLLTVFAAQFLFKVILQLHGRKHRSIGEDEQHCLSGKAIPGSVRVNKSYQASKWCCSVVLACQILELIFFPSNVFEVQCELLILVLSESMKGLSSIVVLASIFNFQRKRTIKMPWTVRLLCLSIFLQTTISLVFKLHFILSHKLILGTGDCLNIIALFSCACLTAIIIRGHTGISVTSGSVAEPLLIGSAEKQTEIKRQCPYGIASLTQLVTFSWINPLFSIGIKKPLEQHEVPDIDVKDSAEFLSHSFHECLERVKEKHGWKTSSVYRAMFLFIWKKAAINASFAMVSAASSYVGPSLINDLVSFLGGKGSHRLQNGYILALIFLSAKFVETVAQRQWIFGARQLGLRLRAALISHIYQKGLHLSNQSRQSHTSGELINYMSVDIQRITDIMWFANIIWMLPIQIFLAINVLQRNLGFGALAGLAATFFIMALNIPLTQKQKDYQSKIMEAKDDRMKSTTEVLRSMKILKLQAWDMQYLHKLENLRTTECNWLWKSLRLQAITAFIFWGSPTFISGITFGVCILMGIPLTAGRVLSALATFRMLQEPIFNLPDLLSALAQAKVSADRIASYLKEDEIKSDAVEIIPKNDAGLEVEIEEGVFSWDLDSESPTLCNINLRVRRGMKVAICGSVGSGKSSLISSILGEMPKLRGRVKIGGCKAYVPQSPWILTGNIRENILFGKPYDHNKYKEIVKACSLTKDFEHFASGDLTEIGERGINMSGGQKQRIQIARAVYQDADIYLLDDPFSALDAHTGNQLFKECLLGTLKDKTILYVTHQVEFLPTADLILVMQNGKIAQAGSFDELLSQNTGFEVLVGAHSQALQSIFNAESSSRAVQTENSSMAINSITCECDLENSKTTQPQSIEKQESAQDLSKDVAERGRLTQDEEREKGSIGKEVYWSYLTAVRRGALAPVIITAQSFFQILQVASNYWMAWASPPTAEAPEKIGTSLLFTVYMMLALGSAVCVLVRAMLVAIVGLLTSQKLFKGMLHSLLRAPMSFFDSTPTGRILNRASTDQSVLDLEIAGKLGWCAFSVIQILGTIAIMSQVAWPVFAVFIPVTAICFRYQQYYIPTARELARLSGIQRAPILHHFAESLAGAATIRAFKQEERFTYANVCFIDNHSRPWFHNVSSMEWLSFRLNMLSNFVFAFSLILLVSLPEGLINPSIAGLAVTYGLNLNSQLATIIWNICNAENKMISVERILQYSRIPSEAPLLIEENRPSKIWPESGSICFKNLQVRYAEHLPSVLKDITCTIPGRNKVGVVGRTGSGKSTLIQALFRIVEPREGSIIIDGVDICKIGLHDLRSRISIIPQDPTMFEGTVRGNLDPLAQYSDQKIWEVLDKCQLGEVIRSNDRKMESTVVENGENWSVGQRQLFCLGRALLKRSSILVLDEATASVDSATDRILQETIRKEFNDCTVVTIAHRIHTVIDSDLILVLSDGRILEYDTPAKLLEREDSSFSRLIKEYSIKSQL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05665	ABCC1	ABC transporters	map02010
		Sphingolipid signaling pathway	map04071
		Vitamin digestion and absorption	map04977

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0042626	Molecular Function	ATPase activity, coupled to transmembrane movement of substances
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	75.850
SRP064423	SRR2545915	Juvenile tuber	98.150
SRP108465	SRR5643513	five period of Gastrodia elata	96.910
	SRR5643514	five period of Gastrodia elata	63.980
	SRR5643515	five period of Gastrodia elata	46.220
	SRR5643524	five period of Gastrodia elata	46.800
	SRR5643525	five period of Gastrodia elata	0.910
	SRR5643528	five period of Gastrodia elata	0.750
	SRR5643658	five period of Gastrodia elata	1.660
	SRR5643659	five period of Gastrodia elata	33.330
	SRR5643660	five period of Gastrodia elata	22.610
	SRR5643661	five period of Gastrodia elata	37.450
	SRR5643662	five period of Gastrodia elata	36.620
	SRR5643663	five period of Gastrodia elata	56.010
	SRR5643664	five period of Gastrodia elata	43.660
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	123.520
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	155.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	120.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	108.620
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	202.840
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	235.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	127.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	205.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	83.290
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	116.490
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	139.430
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	139.430
SRP279888	Gastro	Gastrodia elata tuber	12.38
	Juven	Juvenile tuber	38.06
	Mother_Gastro	Mother tuber of Gastrodia elata	3.25
	Mother_Juven	Mother tuber of Juvenile	15.82