Detail information of GWHGAAEX004372/evm.TU.scaffold_148.101


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG01183.00E-94FOG: RRM domain
nrgi|672125832|ref|XP_008786344.1|4.54E-150PREDICTED: RNA-binding protein 34 [Phoenix dactylifera]
Swissprottr|Q9FGS0|CP31B_ARATH2.00E-07RNA-binding protein CP31B, chloroplastic {ECO:0000305} (Precursor)
trEMBLtr|M0SQ69|M0SQ69_MUSAM2.00E-136Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P19060_001}
TAIRAT5G468403.00E-94RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000014724584432474039+
Transcript Sequence

Network for GWHGAAEX004372

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_12432890.00013
PF00076.21RRM_13534143.50E-09
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.370
SRR2545915Juvenile tuber10.510
SRP108465SRR5643513five period of Gastrodia elata8.570
SRR5643514five period of Gastrodia elata7.960
SRR5643515five period of Gastrodia elata6.420
SRR5643524five period of Gastrodia elata7.640
SRR5643525five period of Gastrodia elata6.290
SRR5643528five period of Gastrodia elata4.530
SRR5643658five period of Gastrodia elata6.090
SRR5643659five period of Gastrodia elata8.320
SRR5643660five period of Gastrodia elata9.200
SRR5643661five period of Gastrodia elata7.820
SRR5643662five period of Gastrodia elata4.850
SRR5643663five period of Gastrodia elata5.760
SRR5643664five period of Gastrodia elata5.040
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.270
SRR6049655Rhizomagastrodiae_C368-T10_good_112.520
SRR6049656Rhizomagastrodiae_C368-T07_good_19.880
SRR6049657Rhizomagastrodiae_C368-T07_good_19.150
SRR6049658Rhizomagastrodiae_C368-T04_good_18.100
SRR6049659Rhizomagastrodiae_C368-T04_good_17.210
SRR6049660Rhizomagastrodiae_C368-T01_good_18.570
SRR6049661Rhizomagastrodiae_C368-T04_good_19.420
SRR6049662Rhizomagastrodiae_C368-T01_good_112.040
SRR6049663Rhizomagastrodiae_C368-T01_good_110.790
SRR6049664Rhizomagastrodiae_C368-T10_good_18.260
SRR6049665Rhizomagastrodiae_C368-T10_good_18.260
SRP279888GastroGastrodia elata tuber 4.97
JuvenJuvenile tuber10.40
Mother_GastroMother tuber of Gastrodia elata 9.22
Mother_JuvenMother tuber of Juvenile 8.16