Detail information of GWHGAAEX004377/evm.TU.scaffold_149.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|375147536|ref|YP_005009977.1| | 4.00E-31 | multicopper oxidase type 3 [Niastella koreensis GR20-10] |
| KOG | KOG1263 | 0 | Multicopper oxidases |
| nr | gi|695039947|ref|XP_009407530.1| | 0 | PREDICTED: laccase-24-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9SR40|LAC7_ARATH | 0 | Laccase-7 (Precursor) |
| trEMBL | tr|V4USE8|V4USE8_9ROSI | 0 | Laccase {ECO:0000256|RuleBase:RU361119} |
| TAIR | AT3G09220 | 0 | laccase 7 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000146 | 368082 | 372746 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004377
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07732.14 | Cu-oxidase_3 | 32 | 145 | 4.30E-42 |
| PF00394.21 | Cu-oxidase | 161 | 309 | 3.80E-35 |
| PF07731.13 | Cu-oxidase_2 | 409 | 544 | 4.70E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0046274 | Biological Process | lignin catabolic process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0052716 | Molecular Function | hydroquinone:oxygen oxidoreductase activity |
| GO:0005507 | Molecular Function | copper ion binding |
| GO:0048046 | Cellular Component | apoplast |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.020 |
| SRR2545915 | Juvenile tuber | 9.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 154.320 |
| SRR5643514 | five period of Gastrodia elata | 79.610 | |
| SRR5643515 | five period of Gastrodia elata | 159.560 | |
| SRR5643524 | five period of Gastrodia elata | 78.150 | |
| SRR5643525 | five period of Gastrodia elata | 17.600 | |
| SRR5643528 | five period of Gastrodia elata | 1.040 | |
| SRR5643658 | five period of Gastrodia elata | 0.310 | |
| SRR5643659 | five period of Gastrodia elata | 3.170 | |
| SRR5643660 | five period of Gastrodia elata | 2.770 | |
| SRR5643661 | five period of Gastrodia elata | 1.250 | |
| SRR5643662 | five period of Gastrodia elata | 1.780 | |
| SRR5643663 | five period of Gastrodia elata | 1.740 | |
| SRR5643664 | five period of Gastrodia elata | 3.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 175.870 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 314.970 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 225.490 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 120.630 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 125.220 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 140.220 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 84.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 119.200 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 135.750 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 151.700 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 306.760 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 306.760 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.38 |
| Juven | Juvenile tuber | 1.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1,138.56 | |
| Mother_Juven | Mother tuber of Juvenile | 510.02 |