Detail information of GWHGAAEX004382/evm.TU.scaffold_149.17


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG28874.00E-69Membrane protein involved in ER to Golgi transport
nrgi|672177730|ref|XP_008808968.1|2.50E-82PREDICTED: vesicle transport protein SFT2B [Phoenix dactylifera]
trEMBLtr|C5XV04|C5XV04_SORBI1.00E-80Putative uncharacterized protein Sb04g023300 {ECO:0000313|EMBL:EES07001.1}
TAIRAT5G235504.00E-69Got1/Sft2-like vescicle transport protein family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000146895034946664+
Transcript Sequence

Network for GWHGAAEX004382

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04178.11Got1581511.30E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0016192Biological Processvesicle-mediated transport

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.830
SRR2545915Juvenile tuber23.910
SRP108465SRR5643513five period of Gastrodia elata17.730
SRR5643514five period of Gastrodia elata22.880
SRR5643515five period of Gastrodia elata23.710
SRR5643524five period of Gastrodia elata23.670
SRR5643525five period of Gastrodia elata31.630
SRR5643528five period of Gastrodia elata19.120
SRR5643658five period of Gastrodia elata31.410
SRR5643659five period of Gastrodia elata13.480
SRR5643660five period of Gastrodia elata41.470
SRR5643661five period of Gastrodia elata39.260
SRR5643662five period of Gastrodia elata32.330
SRR5643663five period of Gastrodia elata20.780
SRR5643664five period of Gastrodia elata26.530
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.750
SRR6049655Rhizomagastrodiae_C368-T10_good_119.040
SRR6049656Rhizomagastrodiae_C368-T07_good_112.290
SRR6049657Rhizomagastrodiae_C368-T07_good_113.940
SRR6049658Rhizomagastrodiae_C368-T04_good_113.730
SRR6049659Rhizomagastrodiae_C368-T04_good_114.080
SRR6049660Rhizomagastrodiae_C368-T01_good_111.030
SRR6049661Rhizomagastrodiae_C368-T04_good_113.550
SRR6049662Rhizomagastrodiae_C368-T01_good_115.980
SRR6049663Rhizomagastrodiae_C368-T01_good_113.220
SRR6049664Rhizomagastrodiae_C368-T10_good_116.670
SRR6049665Rhizomagastrodiae_C368-T10_good_116.670
SRP279888GastroGastrodia elata tuber 37.19
JuvenJuvenile tuber14.22
Mother_GastroMother tuber of Gastrodia elata 12.08
Mother_JuvenMother tuber of Juvenile 10.21