Detail information of GWHGAAEX004388/evm.TU.scaffold_149.24


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428781575|ref|YP_007173361.1|1.00E-57acetolactate synthase small subunit [Dactylococcopsis salina PCC 8305]
KOGKOG26630Acetolactate synthase, small subunit
nrgi|695037853|ref|XP_009406425.1|0PREDICTED: acetolactate synthase small subunit 2, chloroplastic-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q93YZ7|ILVH2_ARATH0Acetolactate synthase small subunit 2, chloroplastic (Precursor)
trEMBLtr|I1QZ22|I1QZ22_ORYGL0Uncharacterized protein {ECO:0000313|EnsemblPlants:ORGLA11G0076400.1}
TAIRAT5G162900VALINE-TOLERANT 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000014610437421094653-
Transcript Sequence

Network for GWHGAAEX004388

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01842.24ACT801434.50E-12
PF10369.8ALS_ss_C1592315.40E-27
PF13710.5ACT_53233856.20E-14
PF10369.8ALS_ss_C3964687.10E-25
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01653E2.2.1.6S, ilvH, ilvN Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Butanoate metabolismmap00650
C5-Branched dibasic acid metabolismmap00660
Cysteine and methionine metabolismmap00270
Pantothenate and CoA biosynthesismap00770

Gene Ontology

GO term OntologyName
GO:0009082Biological Processbranched-chain amino acid biosynthetic process
GO:1990610Molecular Functionacetolactate synthase regulator activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms45.120
SRR2545915Juvenile tuber51.170
SRP108465SRR5643513five period of Gastrodia elata51.410
SRR5643514five period of Gastrodia elata47.250
SRR5643515five period of Gastrodia elata43.250
SRR5643524five period of Gastrodia elata42.200
SRR5643525five period of Gastrodia elata14.370
SRR5643528five period of Gastrodia elata13.350
SRR5643658five period of Gastrodia elata10.260
SRR5643659five period of Gastrodia elata42.760
SRR5643660five period of Gastrodia elata48.080
SRR5643661five period of Gastrodia elata45.830
SRR5643662five period of Gastrodia elata47.430
SRR5643663five period of Gastrodia elata47.240
SRR5643664five period of Gastrodia elata50.340
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_160.590
SRR6049655Rhizomagastrodiae_C368-T10_good_140.190
SRR6049656Rhizomagastrodiae_C368-T07_good_154.170
SRR6049657Rhizomagastrodiae_C368-T07_good_163.240
SRR6049658Rhizomagastrodiae_C368-T04_good_148.560
SRR6049659Rhizomagastrodiae_C368-T04_good_150.090
SRR6049660Rhizomagastrodiae_C368-T01_good_156.850
SRR6049661Rhizomagastrodiae_C368-T04_good_157.100
SRR6049662Rhizomagastrodiae_C368-T01_good_155.840
SRR6049663Rhizomagastrodiae_C368-T01_good_147.810
SRR6049664Rhizomagastrodiae_C368-T10_good_153.330
SRR6049665Rhizomagastrodiae_C368-T10_good_153.330
SRP279888GastroGastrodia elata tuber 58.34
JuvenJuvenile tuber65.13
Mother_GastroMother tuber of Gastrodia elata 21.22
Mother_JuvenMother tuber of Juvenile 31.55