Detail information of GWHGAAEX004389/evm.TU.scaffold_149.25
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|269836705|ref|YP_003318933.1| | 7.00E-13 | sulfate transporter [Sphaerobacter thermophilus DSM 20745] |
| KOG | KOG0236 | 8.00E-33 | Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) |
| nr | gi|573946898|ref|XP_006655780.1| | 9.75E-33 | PREDICTED: probable sulfate transporter 3.4-like [Oryza brachyantha] |
| Swissprot | tr|Q9LW86|SUT34_ARATH | 2.00E-33 | Probable sulfate transporter 3.4 |
| trEMBL | tr|J3MB68|J3MB68_ORYBR | 4.00E-33 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB06G12620.1} |
| TAIR | AT3G15990 | 8.00E-33 | sulfate transporter 3;4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000146 | 1156385 | 1173216 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004389
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00916.19 | Sulfate_transp | 52 | 122 | 2.90E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008272 | Biological Process | sulfate transport |
| GO:0015116 | Molecular Function | sulfate transmembrane transporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.510 |
| SRR2545915 | Juvenile tuber | 0.570 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
| SRR5643514 | five period of Gastrodia elata | 0.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.280 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.550 | |
| SRR5643663 | five period of Gastrodia elata | 0.200 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.31 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |