Gene detail

Detail information of GWHGAAEX004399/evm.TU.scaffold_149.45

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|219847681\|ref\|YP_002462114.1\|	6.00E-23	serine/threonine protein kinase [Chloroflexus aggregans DSM 9485]
KOG	KOG1187	3.00E-159	Serine/threonine protein kinase
nr	gi\|743764854\|ref\|XP_010912642.1\|	0	PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase-like protein CCR4 [Elaeis guineensis]
Swissprot	tr\|Q9FIJ6\|ACCR4_ARATH	8.00E-160	Serine/threonine-protein kinase-like protein CCR4 (Precursor)
trEMBL	tr\|A0A067E4J6\|A0A067E4J6_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO45816.1}
TAIR	AT5G47850	3.00E-159	CRINKLY4 related 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000146	2500632	2503338	+

Transcript Sequence
>GWHTAAEX004399 TTCTCGTATTTGCAAGCAGAGTCAAAGCGCATCTTTTATTTTACTTTTTCTAACAACGATAACTAATTTTTATTCTAAGTAGGCGGAGGAGTAAATAAACCAAGGTTCCTTCCATTGTCTCCCTTCTTGAGAGGCTCGCTGTGGCACTCGCCCTGTCGGTCTCTTACCAGCTGAATACACGATGATATTTCCAAACCGGTTAACAACTAATATCGCCCGCGAGCGCCAATGCCTTCTTCTCCTTTCCCGTCCCTAATTCTTCTTCTACTGCTGTCGATCGCTTCTTCCTTGATCCCCACTTTTACATTATTTGCCTCTTCTAATCCCCTCTCAACGATCGCCATCTCCGAGGTGGGCAACCAGACGGTGATCTGCGCCCTTCTGCCGACCAGCAGCGACGGCTCCTATGGTCTGAACTGCACCGGCTTCCCTAGCGGGAGGCGGCGGTCGTACCGCACCCCGGCAGGCTATCTCTACTCCGCAGTGGCCGCAGGGAGAGGGTTCCTCTGCGCCGTGAGCTCCGAACCCAGCGACTTCTCCACTTCCAGCATGCGCTGGTGGGACTTCACCCACCCCGACGTCCCTTCCAAGCGCATCTACAGCGGCCCCTCTCTGACCGCATTGGCTGCAGGCGACTCTCACGTCTGCGGCCTAATTGGCCCCTCCAGCGAGCTATATTGCTGGCGATGGCCGGAGCTGAGCATCCCGCCTGGCCTCCGCCTGGCAGCGGTCTCCGTCGGCAGAGATTTCGTCTGCGGCCTGCGCGGAGCAGCCGGCACCGCCGGAACCGCCGTCTGCTTTGGAGGGAATACCAGCGGCGTGGTAGGCACAGAGCCCCAGGGTGTGTTTTCCGCGATCGCCGCCGGGACCCGGCACGCCTGCGCCGTCTTCGTGAACGGTGGCGAGCTGGCTTGCTGGGGCGAAGGAGCCCCACCTGGGACGGCCTCCGATGTCAGCTCCCTCGCCCTGGGCAACGGCCGGACATGCGTTGTCCGCCTCAACGGAACTCTCCACTGCCTCGGCCCCGGCGCTGCTCCGCCGCTGGGCTTTGAGACCGCCCAATTCATGTCTGTGGAAGCGCGCGGCAGCGCCTTCTGCGGCGTGCTGGCTGAGAACTACTCCGTCGTTTGCTGGGGCAGCGAGGCCTTCCAGTCCAAAGCCGTGGTGTTCGACCAGGTCCTGCCCGGAAGCTGCCGTCCCGTATCCGGATGTGGCTGTGGCGTCCTCCCTGGCTCCGGCAACGCCTGCAGCCACGGAGAGGGTATCTGCCAGCCATGCCCCACGGCGGCGGCTCCTCTCTCCCAGACACGCAACAGCAGCCCAAGGCGCCGCCTCCTCTTCATCCTCCTGGGTGCCGTCGGGCTCGGCATCGCCTGTGCCGCTTTCGCCTGCTTCCTGGCCTTTAGGTACGGAAGCCCGAGAGGTCGGGTGTACGATTCCGGCAGAATTTCGCCAGGCGGAGCCAGGGACCAGTCGAGTTCCGGGATGTGGAGGCTATTGGGCAAAGGGCACGGGCCGATGATCCGGGAGTATGGGATGGATACCCTGCTGGCCGCGACCGAGGATTTTGCAGAGCGGAACAAGGTGGGCTCCGGGGGGTTCGGGTCGGTGTACCGCGCGGCCCTCCCCGACCGCGGGGTCGTCGCCATCAAGAGGGGCAGGCCGGCGACAGTCCCGTCGAGCTCACTCCGGCGGCAGGAGATGGAAGCTGCGTTCTTCGCAGAGCTAGCGCTGCTCTCCCGGGTGAACCACAAGAACTTGGTCCGGCTCTACGGGTTTTGCCGTGAGGGCGCGGAGCTGATACTGGTGTACGAGTTCGTGGCCCGGGGCACTCTAGACGCGCACTTGACCCGCTCACCCCTGCCGCCTGGGTCCCCCTTGGCATCATGGGCGGGTAGGATCAGGATCGCATTGGACGCCGCACGCGGGATCGAGTACCTTCATGCGTACGCCGTCCCCACCATAATCCACCGCGACATCAAATCCTCCAACATCTTGCTCGACGAGGAATGGACCGCCAAAGTGTCCGACTTTGGGCTCTCGCTGCTGAACCCCAAGGAGGGAGACAATGCTGAAGACGAGGAAAGAGGAGCGATGGCGGCAGGGACAGTGGGCTACATGGACCCCGAGTACTACCGGCTGCGGCATCTGACGGCCAAGAGCGACGTGTACAGCTTTGGGGTGGTGCTGCTGGAGCTCCTGACGGGGTCCAAGGCCGTGGAGAGGAGCGCTGAGAGCGGGACGCCGAGGAATGTGGTAGAGCACGCTGTGCCCAGCATCGAGATCGATGAGGTGCACCGCGTGCTCGACGAAAGACTGCCTCTGCCCACGCCCTGCGAGATTGAGGCAGTGGCATTTCTTGGGTATCTGGCGGCCGATTGCGTTAGCCCGTCCGGGAGGGACCGACCCACCATGACCGAAGTGGTCGCCGGCTTGGAGCGGGCTTTGCTTGCTAGCGTGAGCCCGGGGGATTCCACCACGAGGGCCGCCGGCCCGGGATAACAACTGCACCGGACACTTTTATCTCTTCTTTGTTTTACTTGTAATGTAATGATATGATTATTCATTGGGTTCGTTCACTGATTCTGGTCATCATTTTAATAAAAAAGTAGTTTTAAATATACAGCTACAGTGTTCAAGAAATAGTCAACAAAAGTTTGGATTACATTATTTTCATATTTTTATAGATGATTTTTTTTTTTTTTTT

Network for GWHGAAEX004399

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	448	733	5.60E-41

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CR4L

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.640
SRP064423	SRR2545915	Juvenile tuber	11.730
SRP108465	SRR5643513	five period of Gastrodia elata	45.760
	SRR5643514	five period of Gastrodia elata	25.650
	SRR5643515	five period of Gastrodia elata	62.650
	SRR5643524	five period of Gastrodia elata	42.800
	SRR5643525	five period of Gastrodia elata	18.600
	SRR5643528	five period of Gastrodia elata	21.270
	SRR5643658	five period of Gastrodia elata	7.970
	SRR5643659	five period of Gastrodia elata	36.100
	SRR5643660	five period of Gastrodia elata	20.350
	SRR5643661	five period of Gastrodia elata	32.830
	SRR5643662	five period of Gastrodia elata	39.700
	SRR5643663	five period of Gastrodia elata	27.100
	SRR5643664	five period of Gastrodia elata	40.770
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	31.490
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	27.680
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	34.140
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	24.770
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.060
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	27.810
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.860
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.860
SRP279888	Gastro	Gastrodia elata tuber	16.46
	Juven	Juvenile tuber	1.92
	Mother_Gastro	Mother tuber of Gastrodia elata	278.77
	Mother_Juven	Mother tuber of Juvenile	136.42