Gene detail

Detail information of GWHGAAEX004400/evm.TU.scaffold_15.1

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0915	Uncharacterized conserved protein
nr	gi\|743785946\|ref\|XP_010922045.1\|	PREDICTED: proteasome-associated protein ECM29 homolog isoform X1 [Elaeis guineensis]
trEMBL	tr\|F6HAC9\|F6HAC9_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49100.1}
TAIR	AT2G26780	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	14372	146617	+

Transcript Sequence
>GWHTAAEX004400 GCAGCTAGATTTCTTGCATCGATTCACATATCCTTGTTTTCTCACTTTCAGCAGAGGATATCTGAAAAATGGCGGATTTCTCTACGCTGCCGCAGCCTTCTGACTCCGAGAGGGAGGATATGCTTGACCGAATGCTCTCTCGCCTCGCTCTCGCCGATGAATCCAAACTTGAGCAACTGCTATCGAAGATTCTCCCTTACTCTATCTCATCCCTCTCTTCATCTTCTCCTTCCATCCGCAAAATGGTTTTGGATATTCTAAGTCATGTTAACAAACGCGTGAAGCACCGCCTGGAAATTTGCTTACCAGTGTTTGAGCTGTGGAAGATTTATTGTGATGCCAATGGCTTTCCCATGGTTAGAAACTTTTGTATAGTATACATCGAGATGTCATTTGATCGTTTGCCATTTGAGGAGAAATCTAAAATGGCCCCTGATCTTTTAGTCAATGTCTCAAACCTTTCTGCTCAACACCAAGACATCATTCTAAGGATCATCTTGAAGGCAATCGGAGAGTGCCATTCAAGCCAACTAGATGAAAGTATTGGTGTACGATACAAGCATTGTGATGGCAAGGACAGACAACTTTTTGTGGAATTTTGTCTCCATACAGTTTTATATCAGCCACAATCTCTTGGTTGCCCAGCAGGGCTTTCTATATCTCAAACAAATCGTATTACAGGAAAATTTCCATTGAAAGGAGATGCTTTGCTAAGGACAAAGCTCGGAATATTGCATGTTATTGAATCAATGCAGCTGGCACCTGAGCTGGTATATCCTCTTTATTTATCTGCTTCTTCGGATAGTCAAGAGCAAGTTGCTAAAAGAGGAGAGAATCTTCTAAAGCGAAAAGCTGCTGGTGTAAATTTGGATGACTCTGACTTGATAAACAGATTGTTTATCTTATTTAATGGTACTACAAGTGTTGAAAGTGTACCTGCTGATTTTCGGGTAACCCCGGTGAACAATGCACTTCGTTTGCAGCTTATGTCTGTTTTTTGTCACTCAGTTGCTGCTGCCAATGCCTTCCCATCTGCACTTCAGTGTATTTTTTCCTGCATTTACGGAAATGGGACAACAGCAAGACTGAAGCAGTTGGGAATGGAGTTTACTGTCTGGGTATTTAAACATGCATTAATAGACCGATTGAAGCTTATGGGTCCTGTCATTCTAAATGCAGTATTGCGGCTGCTTGATGGCTCTTCCTTTGCAGAAACAGATGCAGCTGCTAAAGATGTTAAATCTTTTGCTTTCCAAGCTATAGGTCTGCTTGCTGCTCGCATGCCCCAACTCTTCAGGGATAAAGTTGACGTTGCTGTTCAACTGTTCACGAAATTGAAATTGGAAGGCCAATCTCTTCGTCTTACTATACAAGAAACACTCATTTCACTCACAGTTGCATACAAGGACGCTCCATTGGCTGTGTTGAAGGAGCTGGAAGCATTTTTACTGCAAAACTGCCAAGAGGAGCAAAGTGAGGTGCGATTTTGTGTTATGAAGTGGGCAACTTCCTTGTTCAGTTTACATCATTGTCCTAGCCGGTACATTTGCATGCTCGGGAGTGATGACTCAAAGATGGATATCAGAGAAATGTCCCTAGAAGGTCTTCATTTGACGAAGGATCAGGAACAGTTGAATAGTGATAGTGCCAATTATCCTAAGTTGAAAGATATTCTGGATTACATATGTTTGCGGCAACCAAAATTATTAGACTCTACAGAACATCAGGACAGGGAACTTCTTTTCCCATCAAAAACTTATTTTGCTATGGTTAGGTTTTTGCTCAAATGCTTCAAGTCAGATTGCAGAACATGTGATTCTGAAACTGATGAATTCAGAGCTGTAGTAATGACATTGTGCTTAGTGTTTGAGCACGGAATGGCAGTTGATGGATCTGTTGAGCTTCATGGTACATCTTTGAAGGGTTTAATTGAGATTGGTTCTCATCAGCCCAAGTTGGTGGCATCCCATTATGCTGAACGCTTGCATTGGTTAAAGATTTTCTTGGGTCATGTTGATTTTGATACTCGAGAATTTGCATCACGACTATTGGGAGTAGCTAGTTCTGCTATCTCTACTGCTGAAGCTTCTGCTCTAATATCTGAATTACATTCCTCATTTAGTCAAACCAAATTGAGATTTGAAATTCAACACGGGCTTTTGTGCGCAATGGGGTATGTTTTGGCTGAGTGCATGCGGGATGTTCCCAAAATTCCAGAATCTCTATTTGCAAGCATTATTGAGCACCTTGTAAATGTGGTTTGCTTAGAAACCTCAGCTTTAGCTTCAGCTTCTATGGCAGCCCTTGGCCATATTGGGCTACGCCATCCATTGCCTAAAGATATCAATCATGATGCGTTCTCAGGTGGAGTCTTAACTTTTTTGCATGAAAGGATAAAAAAGCTGCTTGATGGGAATGATATCAAAACAATACAGAGGATTGTTGTTTCTCTTGGGCATATTTCTGTGAAAGAAGCATCAATATCTCACTTGAAAAATGCTCTCGATTTAATTTTTGGTCTTTCTAGATCAAAGGTGGAAGATATACTCTTCGCTGCTGGGGAGGCTTTGGCATTTATATGGGGTGGAGTGCCTGTGACAGGAAATGAGATTTTGAAAACAAATTATACCTCTCTTTCTCAAACATATAATTATCTTTCTAGTGAAATATCTTCAGCTTCAATGAGTTGGAGCTCATCAGATCTTATTGTTGACAATGAGTCTCGTAATTTAGCAAGAGATTTCATAACAAAGAAACTTTTTGATGAACTACTTTATAGTAACAGGAAAGAAGAACGATGTGCTGCAACGGTCTGGTTAGTTTCTTTATGCATGTACTGCGGTCGTCATCCTAAAATTCAGCATCTTCTTCCAGAAATTCAGGAATCATTTTCGCATCACCTTGGTGACCAGAATGAACTTACACAGGAATTGGCTTCCCATGGCATGAGCATTGTGTATGAACTTGGTGACTCTTCTATGAAGCAAGAACTTGTTAATGCTTTAGTAAACACGTTGACAGGTTCTGGAAGGAAGAAGAAAGCTATAAAGTTGACGGAAGACTCTGAAGTATTCCAGGAAGGAGCTATTGGAGAAACTCTTGGTGGTGGAAAACTTAGCACATACAAGGAACTTTGCAACTTAGCAAATGAAATGGGGCAGCCTGACTTAATCTATAAATTTATGGATTTGGCTAATTACCAGGCATCTCTTAATTCCAAAAGAGGTGCTGCCTTTGGGTTTTCAAAAATTGCCAAGCAAGCTGGCGATGTACTTAAGCCACAGATGCGTGAACTGATACCCAAGTTAGTTCGCTTTCACTATGACCCTGAAAAGAATGTTCAGGATGCCATGGCATGCATATGGAGGGCTCTTGTTACTGATTCAAAAAAAGCTATTGATGAATATTATGATTTGATTGTTGAGGATTTGTTGGTGCAATCTGGATCAAGACTTTGGCGTTCTCGTGAAGCTTCATGCCTTGCACTTGCAGATATTATTCAAGGGAAGAAATTTAGTCAAATATCGAAGCACTTAAGGAGAATATGGATGACAGCTTTTCGTGTTATGGATGACATTAAGGAAACTGTCCGTAATTCTGGGGAAACTTTATGTCGTTCAGTAACTTCATTGACTATTAGGCTGTGTGATATCTCACTTACTCCACTATCAGATGCAAGTGAAACAATGAATATTGTTCTTCCTTTTGTACTTGCGGAAGGGATTGTAAGTAAAGTTTCTAGCATACAAAAAGCATCAATTGGTATTGTATTAAAGCTTTCAAAGGGTGCAGGGAATGCTATTCGTCCACACCTGCCTGACCTTGTTTGCTGTATGCTGGAATGCTTATCTAGTTTTGAAGATCAAAGGCTTAATTATGTTGAGTTGCATGCAACAACTGTTGGAATTGATGTGGAAAAATTGGAGAATTTGCGAGTTTCTGTATCTAAAGACTCTACAATGTGGGAAACCCTTGAGTTGTGCATCAAATTTACTGATAAGCAGTCATTGGAATCCTTAGTTCCTCGTTTAGCTCAACTTGTCAGGTCTGGAGTTGGACTGAATACAAGGGCTGGTGTTGCTAACTTCATTACTCTGCTAGTTCAGAAAGTAACAGATGACATAAAGCCTTTCACAAGTATGCTTTCAAAATTATTGTTTCGAGCTACTCTCGAGGAAAAGCGAGGTGTAGCTAAGCGATCTTATGCTGCTGCCTGTGCCATTATTTTAAAATATGGAAGCTCTTCGTTAGTAGAGAAACTTATTGCAGATACTGTAGCCCTTCATTTGGGTGAAAGAGATTCTCAGATTTCTTGTGCAATTCTTCTTAAAAATTATGCAAATCTTGCTGCAGATGTTTGGAGAGGTTACCATGCTACCGTAATTCCCGTTATCTTTGTTGCAAGATTTGAAGATGATAAAAATATTTGTGCACTATATGAGGAGCTATGGGAGGATAATTCAACTAGTGATCGTGTCACTCTTCAATTATATTTGCCAGAAATTGTTTCTATAATCTGCTATTGCATCTCTTCATCATCTTGGGCAAGTAAACGGAAGTCCGCTAAAGCAATGATTAAACTTTGTGAAACGATGGGCGATTCTGTGTCAGCATCTCACCAAGTTTTACTCAGGTGCCTTCTCAAAGAAGTTCCTGGTCGTTTTTGGGAGGGTAAAGATGTTATTCTTCATGCCATAGCTTCGCTCTGCTTATCCTGCCATGTTGCTATCTCTACTGAAGACTCGGCATCTTCAGGGCTTATTTTAAGCTCTGTACTATCTTGTTGTAGCAGAAAAGAAAATTCTTATCGTGAAGCAGCGTTAATATGCCTTAAGCAGATTGTTAGTTCTTTTGATGATCCAAAGTGTTTCAGTGAGGTTTTCCCTTTTCTGTATGACGCATGTAATCAAGTTTTTGTAAACAAAGCTGCAAACGCTAGTGCTATCAATACTACTGCAGCAATAGGTAATGACTCCATTCAAAATACCAGCATAGAACTTGAAAAGGCCTTGAATTGCTTTACAGCTTGTTTACATGTCGCTAGAATTGAGGATGTCATCAAAGAAAAAGGAAGAATAATTCATATTCTCTTACATTCTATGTTACCTGGATTTAATTGGAACGTCAAGTTGTCAGTTATTTCATCTGCCAAAGAGCTTTGCTGTAAATTGCAATGCAGTTTGGATAAAAACACAGAATCTTATGGTATAGTATCTTTGATTTATGAGTTGTTTCATTCTGTTACCCCAAAATTTGTTGAAGCCATTCAAACTGTGAAGATCTCTCAGATTCATAATGCTGCTTCAGAGTGCATTTTTGAGATCGTCAAACAAATAAGAAGCATTCCCTCGTTGGAACAAAATGGGCAACAGCTTGCCGATCTCAGAGACGAATTAATTCAACTCAGCGGCATCGTGAAAAGCGAACAAGCCAAGACTTTTCTTCTGAGATCAATTGAAATCCTACAATGAAAGTTGTAGGATTTTGTATGCTTAAATTATGATATTAATGCTCTTCATTATGATCTAAAATTTCCTTTTAATGATTCATAGGAAACAAAATTATGTACAACATCGTCATATTTATAAGCTGTGAACTATAAAGTGTATTTTTTAATGTCTTCTATTTGTAATTGATAGTGTGTGAAAGGTTGGGCTGTTAGTGTTATTTTATGAAAAGCTTTTGTACAGGCCTCAAAGCTACTTCATTAGAGCTGATACCATCAATTGTTGCAGCATTACACCAGGATTTGGTACAAGCTGGAACAAGGTGTAAGGCCACACATTCGGCATGCTCGTGTGCACCGGATGCACAGCCTTACATGAATGCACAGCCTTACAATAATACATGCCAGGCTAAATAATGTACTGGAATGAAAAAAAA

Network for GWHGAAEX004400

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13001.6	Ecm29	19	497	7.80E-142

Protein Sequence

>GWHPAAEX004400
MADFSTLPQPSDSEREDMLDRMLSRLALADESKLEQLLSKILPYSISSLSSSSPSIRKMVLDILSHVNKRVKHRLEICLPVFELWKIYCDANGFPMVRNFCIVYIEMSFDRLPFEEKSKMAPDLLVNVSNLSAQHQDIILRIILKAIGECHSSQLDESIGVRYKHCDGKDRQLFVEFCLHTVLYQPQSLGCPAGLSISQTNRITGKFPLKGDALLRTKLGILHVIESMQLAPELVYPLYLSASSDSQEQVAKRGENLLKRKAAGVNLDDSDLINRLFILFNGTTSVESVPADFRVTPVNNALRLQLMSVFCHSVAAANAFPSALQCIFSCIYGNGTTARLKQLGMEFTVWVFKHALIDRLKLMGPVILNAVLRLLDGSSFAETDAAAKDVKSFAFQAIGLLAARMPQLFRDKVDVAVQLFTKLKLEGQSLRLTIQETLISLTVAYKDAPLAVLKELEAFLLQNCQEEQSEVRFCVMKWATSLFSLHHCPSRYICMLGSDDSKMDIREMSLEGLHLTKDQEQLNSDSANYPKLKDILDYICLRQPKLLDSTEHQDRELLFPSKTYFAMVRFLLKCFKSDCRTCDSETDEFRAVVMTLCLVFEHGMAVDGSVELHGTSLKGLIEIGSHQPKLVASHYAERLHWLKIFLGHVDFDTREFASRLLGVASSAISTAEASALISELHSSFSQTKLRFEIQHGLLCAMGYVLAECMRDVPKIPESLFASIIEHLVNVVCLETSALASASMAALGHIGLRHPLPKDINHDAFSGGVLTFLHERIKKLLDGNDIKTIQRIVVSLGHISVKEASISHLKNALDLIFGLSRSKVEDILFAAGEALAFIWGGVPVTGNEILKTNYTSLSQTYNYLSSEISSASMSWSSSDLIVDNESRNLARDFITKKLFDELLYSNRKEERCAATVWLVSLCMYCGRHPKIQHLLPEIQESFSHHLGDQNELTQELASHGMSIVYELGDSSMKQELVNALVNTLTGSGRKKKAIKLTEDSEVFQEGAIGETLGGGKLSTYKELCNLANEMGQPDLIYKFMDLANYQASLNSKRGAAFGFSKIAKQAGDVLKPQMRELIPKLVRFHYDPEKNVQDAMACIWRALVTDSKKAIDEYYDLIVEDLLVQSGSRLWRSREASCLALADIIQGKKFSQISKHLRRIWMTAFRVMDDIKETVRNSGETLCRSVTSLTIRLCDISLTPLSDASETMNIVLPFVLAEGIVSKVSSIQKASIGIVLKLSKGAGNAIRPHLPDLVCCMLECLSSFEDQRLNYVELHATTVGIDVEKLENLRVSVSKDSTMWETLELCIKFTDKQSLESLVPRLAQLVRSGVGLNTRAGVANFITLLVQKVTDDIKPFTSMLSKLLFRATLEEKRGVAKRSYAAACAIILKYGSSSLVEKLIADTVALHLGERDSQISCAILLKNYANLAADVWRGYHATVIPVIFVARFEDDKNICALYEELWEDNSTSDRVTLQLYLPEIVSIICYCISSSSWASKRKSAKAMIKLCETMGDSVSASHQVLLRCLLKEVPGRFWEGKDVILHAIASLCLSCHVAISTEDSASSGLILSSVLSCCSRKENSYREAALICLKQIVSSFDDPKCFSEVFPFLYDACNQVFVNKAANASAINTTAAIGNDSIQNTSIELEKALNCFTACLHVARIEDVIKEKGRIIHILLHSMLPGFNWNVKLSVISSAKELCCKLQCSLDKNTESYGIVSLIYELFHSVTPKFVEAIQTVKISQIHNAASECIFEIVKQIRSIPSLEQNGQQLADLRDELIQLSGIVKSEQAKTFLLRSIEILQ

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0043248	Biological Process	proteasome assembly
GO:0060090	Molecular Function	binding, bridging

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	48.660
SRP064423	SRR2545915	Juvenile tuber	54.380
SRP108465	SRR5643513	five period of Gastrodia elata	28.520
	SRR5643514	five period of Gastrodia elata	29.290
	SRR5643515	five period of Gastrodia elata	25.220
	SRR5643524	five period of Gastrodia elata	27.280
	SRR5643525	five period of Gastrodia elata	24.960
	SRR5643528	five period of Gastrodia elata	16.010
	SRR5643658	five period of Gastrodia elata	27.680
	SRR5643659	five period of Gastrodia elata	29.260
	SRR5643660	five period of Gastrodia elata	33.680
	SRR5643661	five period of Gastrodia elata	24.970
	SRR5643662	five period of Gastrodia elata	28.150
	SRR5643663	five period of Gastrodia elata	33.190
	SRR5643664	five period of Gastrodia elata	35.710
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.950
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	25.160
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	33.340
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	39.690
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	39.360
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	49.480
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	40.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.150
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.420
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.420
SRP279888	Gastro	Gastrodia elata tuber	52.14
	Juven	Juvenile tuber	54.07
	Mother_Gastro	Mother tuber of Gastrodia elata	22.38
	Mother_Juven	Mother tuber of Juvenile	39.86