Detail information of GWHGAAEX004404/evm.TU.scaffold_15.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08002.00E-35FOG: Predicted E3 ubiquitin ligase
nrgi|743807300|ref|XP_010928061.1|2.95E-54PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Elaeis guineensis]
Swissprottr|Q9SI09|XERIC_ARATH5.00E-36Probable E3 ubiquitin-protein ligase XERICO
trEMBLtr|M0U453|M0U453_MUSAM1.00E-51Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P27960_001}
TAIRAT2G042402.00E-35RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000019234759235825+
Transcript Sequence

Network for GWHGAAEX004404

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_2861295.00E-13
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms95.610
SRR2545915Juvenile tuber291.580
SRP108465SRR5643513five period of Gastrodia elata76.940
SRR5643514five period of Gastrodia elata53.090
SRR5643515five period of Gastrodia elata158.510
SRR5643524five period of Gastrodia elata54.530
SRR5643525five period of Gastrodia elata541.330
SRR5643528five period of Gastrodia elata236.490
SRR5643658five period of Gastrodia elata629.720
SRR5643659five period of Gastrodia elata216.380
SRR5643660five period of Gastrodia elata200.200
SRR5643661five period of Gastrodia elata362.070
SRR5643662five period of Gastrodia elata328.400
SRR5643663five period of Gastrodia elata222.750
SRR5643664five period of Gastrodia elata83.620
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1125.060
SRR6049655Rhizomagastrodiae_C368-T10_good_188.200
SRR6049656Rhizomagastrodiae_C368-T07_good_1110.950
SRR6049657Rhizomagastrodiae_C368-T07_good_1118.790
SRR6049658Rhizomagastrodiae_C368-T04_good_1119.990
SRR6049659Rhizomagastrodiae_C368-T04_good_1130.580
SRR6049660Rhizomagastrodiae_C368-T01_good_199.860
SRR6049661Rhizomagastrodiae_C368-T04_good_1114.690
SRR6049662Rhizomagastrodiae_C368-T01_good_1126.850
SRR6049663Rhizomagastrodiae_C368-T01_good_1112.590
SRR6049664Rhizomagastrodiae_C368-T10_good_196.750
SRR6049665Rhizomagastrodiae_C368-T10_good_196.750
SRP279888GastroGastrodia elata tuber 115.11
JuvenJuvenile tuber45.95
Mother_GastroMother tuber of Gastrodia elata 165.38
Mother_JuvenMother tuber of Juvenile 134.23