Detail information of GWHGAAEX004406/evm.TU.scaffold_15.9
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|459288441|ref|YP_007511598.1| | 5.00E-66 | extradiol ring-cleavage dioxygenase [Bradyrhizobium oligotrophicum S58] |
| nr | gi|695013377|ref|XP_009393470.1| | 5.94E-102 | PREDICTED: extradiol ring-cleavage dioxygenase-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q949R4|DIOXL_ARATH | 2.00E-83 | Extradiol ring-cleavage dioxygenase |
| trEMBL | tr|M0SGR4|M0SGR4_MUSAM | 2.00E-102 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P21980_001} |
| TAIR | AT4G15090_2 | 4.00E-83 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 314677 | 318500 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004406
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02900.17 | LigB | 3 | 235 | 4.50E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15777 | DOPA | Betalain biosynthesis | map00965 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006725 | Biological Process | cellular aromatic compound metabolic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0016701 | Molecular Function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen |
| GO:0008198 | Molecular Function | ferrous iron binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 114.040 |
| SRR2545915 | Juvenile tuber | 92.370 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 124.410 |
| SRR5643514 | five period of Gastrodia elata | 186.040 | |
| SRR5643515 | five period of Gastrodia elata | 139.600 | |
| SRR5643524 | five period of Gastrodia elata | 164.910 | |
| SRR5643525 | five period of Gastrodia elata | 66.930 | |
| SRR5643528 | five period of Gastrodia elata | 88.530 | |
| SRR5643658 | five period of Gastrodia elata | 64.560 | |
| SRR5643659 | five period of Gastrodia elata | 38.180 | |
| SRR5643660 | five period of Gastrodia elata | 56.590 | |
| SRR5643661 | five period of Gastrodia elata | 39.590 | |
| SRR5643662 | five period of Gastrodia elata | 55.590 | |
| SRR5643663 | five period of Gastrodia elata | 41.730 | |
| SRR5643664 | five period of Gastrodia elata | 60.830 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 130.660 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 141.660 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 92.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 199.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 115.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 150.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 93.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 94.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 48.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 45.730 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 59.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 59.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 38.04 |
| Juven | Juvenile tuber | 69.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 206.08 | |
| Mother_Juven | Mother tuber of Juvenile | 285.11 |