Detail information of GWHGAAEX004410/evm.TU.scaffold_15.13
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|695009029|ref|XP_009391126.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g63370 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9M1V3|PP296_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g63370 |
| trEMBL | tr|I1IYP2|I1IYP2_BRADI | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI5G12970.1} |
| TAIR | AT3G63370 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 331260 | 334656 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004410
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 114 | 162 | 3.90E-09 |
| PF01535.19 | PPR | 190 | 210 | 0.08 |
| PF13041.5 | PPR_2 | 217 | 263 | 9.20E-09 |
| PF01535.19 | PPR | 293 | 320 | 0.012 |
| PF01535.19 | PPR | 321 | 350 | 1.40E-06 |
| PF01535.19 | PPR | 422 | 452 | 1.90E-06 |
| PF01535.19 | PPR | 494 | 518 | 0.79 |
| PF13041.5 | PPR_2 | 521 | 561 | 1.50E-08 |
| PF01535.19 | PPR | 596 | 616 | 0.89 |
| PF13041.5 | PPR_2 | 621 | 669 | 1.60E-09 |
| PF01535.19 | PPR | 697 | 722 | 0.16 |
| PF14432.5 | DYW_deaminase | 796 | 855 | 6.80E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.760 |
| SRR2545915 | Juvenile tuber | 7.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.760 |
| SRR5643514 | five period of Gastrodia elata | 9.100 | |
| SRR5643515 | five period of Gastrodia elata | 8.350 | |
| SRR5643524 | five period of Gastrodia elata | 9.400 | |
| SRR5643525 | five period of Gastrodia elata | 2.550 | |
| SRR5643528 | five period of Gastrodia elata | 1.310 | |
| SRR5643658 | five period of Gastrodia elata | 0.840 | |
| SRR5643659 | five period of Gastrodia elata | 13.890 | |
| SRR5643660 | five period of Gastrodia elata | 14.060 | |
| SRR5643661 | five period of Gastrodia elata | 14.750 | |
| SRR5643662 | five period of Gastrodia elata | 10.390 | |
| SRR5643663 | five period of Gastrodia elata | 11.250 | |
| SRR5643664 | five period of Gastrodia elata | 9.700 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.570 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.220 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.820 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.080 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.620 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.790 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.050 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.110 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.110 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.37 |
| Juven | Juvenile tuber | 16.42 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.52 | |
| Mother_Juven | Mother tuber of Juvenile | 6.27 |