Detail information of GWHGAAEX004411/evm.TU.scaffold_15.14
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|339483759|ref|YP_004695545.1| | 1.00E-96 | Heme A synthase [Nitrosomonas sp. Is79A3] |
| KOG | KOG2725 | 0 | Cytochrome oxidase assembly factor COX15 |
| nr | gi|743815281|ref|XP_010930293.1| | 0 | PREDICTED: cytochrome c oxidase assembly protein COX15 [Elaeis guineensis] |
| Swissprot | tr|Q9FKT8|COX15_ARATH | 0 | Cytochrome c oxidase assembly protein COX15 |
| trEMBL | tr|M0SBN7|M0SBN7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P04190_001} |
| TAIR | AT5G56090 | 0 | cytochrome c oxidase 15 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 335296 | 346790 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004411
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02628.14 | COX15-CtaA | 111 | 441 | 8.10E-115 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0006784 | Biological Process | heme a biosynthetic process |
| GO:0016627 | Molecular Function | oxidoreductase activity, acting on the CH-CH group of donors |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 32.230 |
| SRR2545915 | Juvenile tuber | 20.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.620 |
| SRR5643514 | five period of Gastrodia elata | 13.050 | |
| SRR5643515 | five period of Gastrodia elata | 13.680 | |
| SRR5643524 | five period of Gastrodia elata | 11.030 | |
| SRR5643525 | five period of Gastrodia elata | 23.930 | |
| SRR5643528 | five period of Gastrodia elata | 17.390 | |
| SRR5643658 | five period of Gastrodia elata | 17.430 | |
| SRR5643659 | five period of Gastrodia elata | 15.740 | |
| SRR5643660 | five period of Gastrodia elata | 16.820 | |
| SRR5643661 | five period of Gastrodia elata | 13.900 | |
| SRR5643662 | five period of Gastrodia elata | 13.010 | |
| SRR5643663 | five period of Gastrodia elata | 15.020 | |
| SRR5643664 | five period of Gastrodia elata | 20.480 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.310 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.100 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 27.370 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 27.800 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 27.900 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.760 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 23.980 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 18.840 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 18.840 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.20 |
| Juven | Juvenile tuber | 23.70 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 37.40 | |
| Mother_Juven | Mother tuber of Juvenile | 41.67 |