Gene detail

Detail information of GWHGAAEX004424/evm.TU.scaffold_15.27

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1075	1.00E-10	FOG: Reverse transcriptase
nr	gi\|729325132\|ref\|XP_010534730.1\|	1.49E-09	PREDICTED: uncharacterized protein LOC104810236 [Tarenaya hassleriana]
trEMBL	tr\|Q9MA67\|Q9MA67_ARATH	2.00E-09	F2J6.14 protein {ECO:0000313\|EMBL:AAF63129.1}
TAIR	AT1G43760	1.00E-10	DNAse I-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	495651	498986	+

Transcript Sequence
>GWHTAAEX004424 AAGAACACCAAGTTTGGACCACTTTAGTTTGGTATCCAAATTAAACCCTAATTATGTCAGTGGAGGGATGATCTGGTCGATCATGCCAGATATTGGAGAGAAGCTTGTTGTTGAAAGCTGAAATGGAGCAGTTGGGCGGGAGAGTATATAAGCCATTATAGAGGTGGTCGTGTTGGATTTCTTCCTTCGTTTGACGATCCTTTATGAAATTGAAATTAGGGTGAAGCTTAATAAAAATAATATTGTCAGTATAGAAACGACTAACTGAAATAAAATTTCGAGCAACTTTTGATGCATGAAAAAGATTTTAAAATGGAAAGATTGTGTGGGACACAAGACAGAATGACGACATCAAAATTGTCGATGCTAATGGTCAAACCATTGGAAACCTGAATTTGATCTTTGCTTTGATAGGGCTTGTTAATGTGTGTGATACGAAGTTATATGGTGAGTGGCATCAAAGTTGAGGATCCATGGTTCATGTGTGTACATAGCGCTCAATGAGCTTGGCTGAACGTAGCGGTTTGGAACAAGGATATTGCTTGAAAATTTGTCGGTGACAGTGTCCGGTTCTGTAGCATATGTGCCATAATCTGAAAATTGTGATGTTGATGGATCGAAGCTTGGTAATGATGAAATTACAGTAATTCTGCATTCAGTGTTGTTAAAAACTGTGTGCTGGTTGTTGCGTGGAGGAGTCAGAGAAGTTCACGTCGCGGTTCATTAGCCTGTGGCTGAATTCATCTAATAAAAGAGGATTCAATAGAGCAATGATCGCTACTGCGAGTGATGCACAATTCGGTCCCAAAGTGATGAGAATGCTTAGAATGAGTTGTTGCTCAGAGACGACACTTGAGCCAGAGACTTTTGGCATTTTGGATGAAAGCATCCGTACTTTGAGCGCCTTTGTTAATGCTTCTTAACCGAAATTCAAGTTGTTGAAGAAAGAAGAGAGGAGAGAAATAATATAATCATATTTTTAAGTGAAAAAATTCGTAAGAAAATATTTAACTGCTCTCTATTTTCTCTATTTATTTTCACATTTTGCCACATTTATGACACTATTGTTTTTAAGAGAAATTATATGCTTTTTTAAATACATCTTTAAATATTCAGGAGCTGGCATAATTATATTCGAAGATCTAACAAAAATACTAGCTATTTTTATGAGCTTATTCATGACTCGCTAGTCTCTCACGATAGCAAAAAATCTAATAATTAATGGCTTGGCAAAAGTGATTCGGCAAGCAACTTGATAGAGTTCAGTTTTGGTGTGCTCTAACTCTTATATATGAAATAATCATTGCTTCTTGTGAAAAATGTATGCATTCGAGTTTAAATACTGCAAGTATTTTATACTTCACAACAAATATTGTGTGCAATGTTGTGATAATGTTGAAACTTAGGAGCATCTTTACTTTTCTTGCAACTATTCTCATAATCTTATATGGGATTTGACCTATTTCCGCCTATTATGAGCTAAACATTTAAATATTGCGCATTATCTGCCATTGGAAATATCATTATATATTAATGTTAAGTATTTCAAGTTATAGCATTTGGGAGAAAGAAACTTTAGAATATTTCAGAAGAAAGCAAGATGTTCGACTTCGTTAGAAAAGAAGATTTTGCTACAATTTGATGTTGCTCCAATTGATTATTAAATGTCTTTTAAATGCTAGCTGAGTCTGCAACCCCTCTGGGCTTATTAGCTCATTCTAAGTCTTGTGTCATTTTGGTTCCGTTTGCCTTTGTCTAGTTTGGCTGCTTATGACAATTAACCTGGTTTGATTTATCTTTCCTGCGAATGATATTATCCTGATGCTTAGCATTTTTCTACGAAAATTATGACTTTTATACTGTTTTGCTTCAGAATGCTTAGTATTTTTAGATGGAGTTTTCCTCTGAAGGACGAATTGATCAGTTGTTTGCAATTTTTTAGCTAATTATTTCAGTTTTATAGCAGTTTCATTGATTTTTTCTTTTTACTCTACTCACTTTGATGTATGTTAAGTAAACCCAATATTATGCCTGCAATTGACTGAGGTCCTTTTTTTGGCAAACAGAATTTTTGATAATGAATCTGACTGCCACAATTTTACTTATGCTCCGGTTAGCAGGATTTTGGTTAAATGGAATGCTGCAGCCATCGCTTTTTCTCCTAATATTTTTACGGCTTACCTTATAAATGGTTTTCTTAAATCTAATTATGTTAAACGCTGCCTTTCATCTATGCATAGAGTAACATTGAATCCGATAGGCCTTTCTTTGGAATCATATTACTACTATTGCAGTTGTTACCAAGCCATCATGGGAGACTTCAATGGTGTCAGATATGCTAAAGAAAATTTTGATGAAAACAAGATCCCTCCAAATAAACTTACTTCTTTCAATACCTGCATATTTAATTCTACCAAATTTGACTTGCCTGGGGTTAGGCCTGGCTTCACCTGGTATAACAATCAATTAAATAATCCAATCAAATCAAAACTTGATAGAGTTCTCTGCAATGGTTTATGGTTGTCGACCTTCTCCTCCTTTAATTAAGTTCTTCCATCTGTCGCATCGAACCACCCTTCTCCTCATCACACTGAGTGAAAGTCGTAGGAACATGGTCTCCATATTTTGCTTTAAGAATATTTGGAGTAAACTCCCTGGTTTATGAAGCTATCAGCGGTGTATGAGATGCTCATGTATGGGATCCTCTTTTTGTGCATTTTTACAATGCTACCACTCAATGCTGAATACTAGCTGGAACAATTAAGTCTGTTTTGACTTCTATAATCAGAGAAAGGCAAGCTCATTTACTTAATCTACTTGGACAAGATTCCTCCAATCAAATCTATCTTGAGAATCTTGCTGTGGTTCTTTACTTGATAAATTATTGCTCTCTTGGGCAAAATAATAGTCTAAAGCTCATTGGTTGCACAAAGGTGAGGATGATTTAAAATGCTTTTGTCCATATCTCCTATAGATTGAATAAAAACTAGAATCATGCGTATTGGTCATTTTATGATTAGCCACGCTCTCAATCTCCTTAACTCTAACGGTAGTAAGGGTTATCATGGTTCCTTTCTCCAAATACATTCTTTCTTCCTATCACTTAGATATTTGCAAGCTTCCAAATAAATTAAAACAGCTTTGTTTAGTATTAATAATGAAACCTCACCTGACCCAGATGATTTTACTTTACCCCTTTATAAAAGCAAGATGGTCGACTGTTGGTCCTAAGGCATGTGCTGCTATTCAACATTTTTCAGCTTGCACTCTATACCTAGATGGTTAAATCATTTCTTAATCACTTTATAATGCATTATATATATATTTATATATATA

Network for GWHGAAEX004424

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.860
SRP064423	SRR2545915	Juvenile tuber	0.990
SRP108465	SRR5643513	five period of Gastrodia elata	1.530
	SRR5643514	five period of Gastrodia elata	2.550
	SRR5643515	five period of Gastrodia elata	2.140
	SRR5643524	five period of Gastrodia elata	3.540
	SRR5643525	five period of Gastrodia elata	2.220
	SRR5643528	five period of Gastrodia elata	1.590
	SRR5643658	five period of Gastrodia elata	1.910
	SRR5643659	five period of Gastrodia elata	0.830
	SRR5643660	five period of Gastrodia elata	1.380
	SRR5643661	five period of Gastrodia elata	0.980
	SRR5643662	five period of Gastrodia elata	1.000
	SRR5643663	five period of Gastrodia elata	1.660
	SRR5643664	five period of Gastrodia elata	1.040
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.100
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.890
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.030
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.640
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.870
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.870
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.290
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.840
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.870
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.870
SRP279888	Gastro	Gastrodia elata tuber	2.87
	Juven	Juvenile tuber	6.32
	Mother_Gastro	Mother tuber of Gastrodia elata	4.95
	Mother_Juven	Mother tuber of Juvenile	7.92