Detail information of GWHGAAEX004426/evm.TU.scaffold_15.30


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|166368208|ref|YP_001660481.1|1.00E-20WD repeat-containing protein [Microcystis aeruginosa NIES-843]
KOGKOG13321.00E-172Vesicle coat complex COPII, subunit SEC13
nrgi|743811331|ref|XP_010929133.1|0PREDICTED: protein transport protein SEC13 homolog B-like [Elaeis guineensis]
Swissprottr|O64740|SC13B_ARATH4.00E-173Protein transport protein SEC13 homolog B {ECO:0000305}
trEMBLtr|I1KYB6|I1KYB6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G43250.4}
TAIRAT2G300501.00E-172transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000019507041515532+
Transcript Sequence

Network for GWHGAAEX004426

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD408370.042
PF00400.31WD4046840.0045
PF00400.31WD40961310.033
PF00400.31WD401491930.044
PF00400.31WD402072420.006
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K14004SEC13 RNA transport map03013
Protein processing in endoplasmic reticulummap04141
mTOR signaling pathwaymap04150

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms214.800
SRR2545915Juvenile tuber146.720
SRP108465SRR5643513five period of Gastrodia elata164.940
SRR5643514five period of Gastrodia elata159.890
SRR5643515five period of Gastrodia elata157.880
SRR5643524five period of Gastrodia elata161.550
SRR5643525five period of Gastrodia elata239.740
SRR5643528five period of Gastrodia elata241.360
SRR5643658five period of Gastrodia elata263.480
SRR5643659five period of Gastrodia elata171.820
SRR5643660five period of Gastrodia elata194.150
SRR5643661five period of Gastrodia elata198.860
SRR5643662five period of Gastrodia elata228.390
SRR5643663five period of Gastrodia elata189.940
SRR5643664five period of Gastrodia elata231.300
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1244.760
SRR6049655Rhizomagastrodiae_C368-T10_good_1145.270
SRR6049656Rhizomagastrodiae_C368-T07_good_1249.380
SRR6049657Rhizomagastrodiae_C368-T07_good_1274.690
SRR6049658Rhizomagastrodiae_C368-T04_good_1340.270
SRR6049659Rhizomagastrodiae_C368-T04_good_1389.010
SRR6049660Rhizomagastrodiae_C368-T01_good_1306.580
SRR6049661Rhizomagastrodiae_C368-T04_good_1340.100
SRR6049662Rhizomagastrodiae_C368-T01_good_1254.380
SRR6049663Rhizomagastrodiae_C368-T01_good_1316.200
SRR6049664Rhizomagastrodiae_C368-T10_good_1258.830
SRR6049665Rhizomagastrodiae_C368-T10_good_1258.830
SRP279888GastroGastrodia elata tuber 243.94
JuvenJuvenile tuber198.69
Mother_GastroMother tuber of Gastrodia elata 215.91
Mother_JuvenMother tuber of Juvenile 192.67