Detail information of GWHGAAEX004428/evm.TU.scaffold_15.32
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|340617136|ref|YP_004735589.1| | 9.00E-22 | Receptor-like protein kinase [Zobellia galactanivorans] |
| nr | gi|743808971|ref|XP_010928472.1| | 0 | PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Elaeis guineensis] |
| Swissprot | tr|Q9C9N5|Y1668_ARATH | 4.00E-118 | Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 (Precursor) |
| trEMBL | tr|M0SDM7|M0SDM7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P11100_001} |
| TAIR | AT3G57830 | 1.00E-161 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 522229 | 524934 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004428
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 24 | 62 | 1.80E-11 |
| PF13855.5 | LRR_8 | 89 | 149 | 2.70E-08 |
| PF07714.16 | Pkinase_Tyr | 369 | 594 | 7.70E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-III |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.390 |
| SRR2545915 | Juvenile tuber | 1.120 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.960 |
| SRR5643514 | five period of Gastrodia elata | 1.200 | |
| SRR5643515 | five period of Gastrodia elata | 0.630 | |
| SRR5643524 | five period of Gastrodia elata | 0.590 | |
| SRR5643525 | five period of Gastrodia elata | 6.820 | |
| SRR5643528 | five period of Gastrodia elata | 8.580 | |
| SRR5643658 | five period of Gastrodia elata | 3.460 | |
| SRR5643659 | five period of Gastrodia elata | 1.160 | |
| SRR5643660 | five period of Gastrodia elata | 0.700 | |
| SRR5643661 | five period of Gastrodia elata | 0.970 | |
| SRR5643662 | five period of Gastrodia elata | 1.200 | |
| SRR5643663 | five period of Gastrodia elata | 1.120 | |
| SRR5643664 | five period of Gastrodia elata | 0.910 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.300 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.310 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.860 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.440 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.690 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.800 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.980 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.980 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.59 |
| Juven | Juvenile tuber | 1.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.15 | |
| Mother_Juven | Mother tuber of Juvenile | 3.18 |