Detail information of GWHGAAEX004429/evm.TU.scaffold_15.33
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 4.00E-39 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| KOG | KOG0619 | 4.00E-147 | FOG: Leucine rich repeat |
| nr | gi|695063101|ref|XP_009420044.1| | 1.40E-180 | PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q00874|DR100_ARATH | 1.00E-140 | DNA-damage-repair/toleration protein DRT100 (Precursor) |
| trEMBL | tr|M0SBK0|M0SBK0_MUSAM | 1.00E-170 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P03820_001} |
| TAIR | AT3G20820 | 4.00E-147 | Leucine-rich repeat (LRR) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 527440 | 529044 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004429
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 33 | 70 | 1.30E-09 |
| PF00560.32 | LRR_1 | 138 | 160 | 1.7 |
| PF13855.5 | LRR_8 | 216 | 269 | 1.40E-06 |
| PF13855.5 | LRR_8 | 282 | 341 | 2.10E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.640 |
| SRR2545915 | Juvenile tuber | 1.930 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.790 |
| SRR5643514 | five period of Gastrodia elata | 4.310 | |
| SRR5643515 | five period of Gastrodia elata | 3.260 | |
| SRR5643524 | five period of Gastrodia elata | 2.770 | |
| SRR5643525 | five period of Gastrodia elata | 28.260 | |
| SRR5643528 | five period of Gastrodia elata | 25.040 | |
| SRR5643658 | five period of Gastrodia elata | 24.700 | |
| SRR5643659 | five period of Gastrodia elata | 2.440 | |
| SRR5643660 | five period of Gastrodia elata | 1.170 | |
| SRR5643661 | five period of Gastrodia elata | 1.010 | |
| SRR5643662 | five period of Gastrodia elata | 1.310 | |
| SRR5643663 | five period of Gastrodia elata | 1.620 | |
| SRR5643664 | five period of Gastrodia elata | 1.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.950 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.310 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.410 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.650 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.260 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.210 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.210 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.56 |
| Juven | Juvenile tuber | 1.49 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.81 | |
| Mother_Juven | Mother tuber of Juvenile | 3.41 |