Detail information of GWHGAAEX004430/evm.TU.scaffold_15.35_evm.TU.scaffold_15.37


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|146300859|ref|YP_001195450.1|1.00E-75glycoside hydrolase [Flavobacterium johnsoniae UW101]
nrgi|672143672|ref|XP_008795718.1|0PREDICTED: exopolygalacturonase [Phoenix dactylifera]
Swissprottr|A7PZL3|PGLR_VITVI1.00E-21Probable polygalacturonase
trEMBLtr|G7KUF1|G7KUF1_MEDTR0Exo-polyalpha-D-galacturonosidase-like protein {ECO:0000313|EMBL:AES81411.1}
TAIRAT3G57790_10Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000019538200568765+
Transcript Sequence

Network for GWHGAAEX004430

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12708.6Pectate_lyase_324799.90E-08
PF00295.16Glyco_hydro_28923743.50E-21
Protein Sequence

Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH28

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004650Molecular Functionpolygalacturonase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms37.000
SRR2545915Juvenile tuber38.310
SRP108465SRR5643513five period of Gastrodia elata33.720
SRR5643514five period of Gastrodia elata32.540
SRR5643515five period of Gastrodia elata26.100
SRR5643524five period of Gastrodia elata33.060
SRR5643525five period of Gastrodia elata51.520
SRR5643528five period of Gastrodia elata71.370
SRR5643658five period of Gastrodia elata78.600
SRR5643659five period of Gastrodia elata27.710
SRR5643660five period of Gastrodia elata37.100
SRR5643661five period of Gastrodia elata27.850
SRR5643662five period of Gastrodia elata31.000
SRR5643663five period of Gastrodia elata32.370
SRR5643664five period of Gastrodia elata27.460
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_149.710
SRR6049655Rhizomagastrodiae_C368-T10_good_133.890
SRR6049656Rhizomagastrodiae_C368-T07_good_142.550
SRR6049657Rhizomagastrodiae_C368-T07_good_161.060
SRR6049658Rhizomagastrodiae_C368-T04_good_157.860
SRR6049659Rhizomagastrodiae_C368-T04_good_171.880
SRR6049660Rhizomagastrodiae_C368-T01_good_160.340
SRR6049661Rhizomagastrodiae_C368-T04_good_155.130
SRR6049662Rhizomagastrodiae_C368-T01_good_144.200
SRR6049663Rhizomagastrodiae_C368-T01_good_152.450
SRR6049664Rhizomagastrodiae_C368-T10_good_131.420
SRR6049665Rhizomagastrodiae_C368-T10_good_131.420
SRP279888GastroGastrodia elata tuber 24.00
JuvenJuvenile tuber72.34
Mother_GastroMother tuber of Gastrodia elata 36.43
Mother_JuvenMother tuber of Juvenile 46.02