Gene detail

Detail information of GWHGAAEX004431/evm.TU.scaffold_15.38

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672168879\|ref\|XP_008804456.1\|	PREDICTED: uncharacterized protein LOC103717740 isoform X1 [Phoenix dactylifera]
trEMBL	tr\|M0SDM5\|M0SDM5_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P11080_001}
TAIR	AT2G42320	nucleolar protein gar2-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	580693	617490	+

Transcript Sequence
>GWHTAAEX004431 AACAGGTCACCCTTTCACCACCGACAGCCGTCTTTCCGCAACAGTAACCGGCAGCGACCGGCTCAAATGCCGGAGTATGCTCACCTCCAGTACACTCACCTCTCACTGCGAGCGCAACAGACGTCTCGCTTTTCCTTTACCCTCTCCGTTTTAAAACTCCCGCACTCGGTCTTCATTCTTAGACATCAGTGAAAACTAGCCGAAGACAGGGTCTACATCGTTAATGGCGGAAAGAGAACCTTTTTGACGACCAAGGAAGAGGATAGAAGCTGCGAGGTTGCTGTTCTGATATTATGACTATAAAGCATGCTGATGATAAGCACAAGTCTGAAGAGGTCCTAACAAATGTTATTGCAATGCGCCCTAAAGAGAATGGAATGGATAGAGATGACCATTATACAGACATTGAAAAAGAAGATAAACACGGAAATGATGTAGACTCAGATTATGAACCAGCAAGAGACTCCGTTTCTTTGAACAGCAACGAAGACGATAGTAAGGTAAAAAGGAGCTCCCGAGTTCCCAAAAAACTTGTGAAGAAAGAGTTGGGTGAAAACTATCTTCGCCCAACTAAACTTAGTAGTAATCGTCAAGAACAGAAGAAGTTGCAGTTTAGGACATCAAATAATGGAGTAAAGAGATCTCAAAAGCCCAACAAACTTATTTCCAACTCAAACAATTTTGACAGCAAGAAACAAGATGACACATTTGCTTCAAGGACTTCATCAGAAATCTCTGAGGAAATAGATGATAAGACTATTGAAGAGGCCAAGGAGATTGATGTAGATGATGCTCCCATTTGTGATCAAAGTGGTGGAACTGATGATTCTGTGGCCGATACTGAAGAGAATAATCATGATAATGATAAGGTGTATACTTATCAAAAGATTGAGGAGATGGAACTCAGAATTGAAAAACTTGAAGAGGAGCTCTTGGAAGTTGCTGCACTTGAGATTTCTCTATATTCCGTGGTACCAGAGCATGGAAGCTCAGCACATAAGGTACACACACCTGCTCGGCGTCTTACTAGGCTATACATACATGCTTGTAAGCATTTGAGCCAGATCAAGAGGGCAACTATAGCCAAGAACATAGTTTCTGGGCTTGTTTTGATTGCAAGATCCTGTGGCAATGATGTACCTAGGTTAACTTTTTGGTTATCAAACACTGTTGTCCTGAGGGGGCTTATAGTTCAAACCTTTGGTCATTTATCGCCATCAAAAAGATCTTCGGATTCAAATGGTTCATTGAAAGCTGCCAGCCAGGCACAAACTATGAATTGTAAAAATAGCACTGGGGGTAAGCAAGGAAGGCTGCACTGCGTTGTGCCCTACATAGATGATTGGCAGGAAACCAACACATTTATAGTTGCACTTCAAAAGATTGAATTTTGGATATTCTCTAGGGCTGTTGAATCGGTATGGTGGCAGGCCTTGACTCCTTATATGCATTCTCCTCTGGAGGATATGCACCCTTCAAAAGGAATAGGCAAACTGTCAGGACCCACCTTGAGTGTTTCCCGGCAAGGAAATTTTTCTGTTAATTTATGGAAGAGTGCTTTTCACGATGCATTTTATAGGCTTTGCCCAGTTAGAGCTGGTGGGCATGACTGTGGTTGTCTGCCTGTGTTGCTAAGATTGATCATGGAACAATGCATCAGCAGATTGGATGTGGCCATGTTTAATGCTATTTTACGGGAATCAGCAAATGAGATGCCAACAGATCCGGTGTCTGACCCAATTGTTGATCAAAAAGTTCTCCCTGTTTCAGCTGGGGATTTGAGCTTTGGATCTGGCGCTCAGTTGAAAAATACCATTGGGAGTTGGTCTAGATGGCTAACTAATTGGTTTGGCATGGATGTTGACACTTCTGTTGAGGCTGAAGAAAATGATAACAAAGATGATGGCAATAAAACAAACGATTCCAACTCCAAATGCTTCAGTCTTCTCAATGAGTTGAGCGATCTCTTGATGCTTCCCAAAGATATGCTTCTTGAGAGGGCAATAAGGAAAGAGGTGTGCCCCTCAATTGGTTTGCCGTTGTTAACTCGGATATTGTGCAACTTCATGCCTGATGAGTTCTGCCCAGATCCTGTGCCGGGTATTGTTCTTGAAGAGCTTAATTCTGAGGCTTTGATCGAACGAAGACAACCAGATGGCGAACACCGGAACAATGGTTTCCCGCGCACCGCCTTCCCGGTTACGTATGCTCATCCCTCCCTTTCCGATATGGCCGAGAAGGTTCAAGAGGTGGACCAGAAGTCATCTAACCTGCAGAGGAAGACGTCAATGGTGCAGAGGAAAGGCTACACCAGTGACGATGATTTAAATGATCTTGATGATCCTCTTGCTTCTATAATCGATCCGACTCTTCCGTTGGGAGAGAGAAACACGCACAACTCGAGGTACAGGCTTCTCCATGAAGTTTGGTGCGAGTGAATGGTTTCATGTTTTTGCTGCTTTTTGTATGTATGATGATGTTGAGGGATAAAACTAGTATATTATATATATGATATAGAAGAAAGTTAAATGGTTTCACATCTGTTAGTCTCTTGTATGGGATGATCCTTGGGTTCAATTATTATTGTTATTTAAATTCAGTTTTGCTCTTCTCTTGTTGAGGTTTGAGAATCAGATTGCTACTTTTCCAGAAGCTCCATTGATTATTATTTCTGTTTGAAAATGAGAAGTAAGAAAAGTAATATTCAC

Network for GWHGAAEX004431

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	112.530
SRP064423	SRR2545915	Juvenile tuber	176.360
SRP108465	SRR5643513	five period of Gastrodia elata	53.350
	SRR5643514	five period of Gastrodia elata	83.400
	SRR5643515	five period of Gastrodia elata	48.420
	SRR5643524	five period of Gastrodia elata	61.200
	SRR5643525	five period of Gastrodia elata	46.460
	SRR5643528	five period of Gastrodia elata	22.660
	SRR5643658	five period of Gastrodia elata	36.280
	SRR5643659	five period of Gastrodia elata	170.250
	SRR5643660	five period of Gastrodia elata	165.770
	SRR5643661	five period of Gastrodia elata	150.950
	SRR5643662	five period of Gastrodia elata	143.140
	SRR5643663	five period of Gastrodia elata	198.770
	SRR5643664	five period of Gastrodia elata	113.110
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	85.430
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	84.010
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	89.430
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	76.620
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	43.190
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	41.210
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	62.320
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	49.650
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	102.730
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	79.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	108.220
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	108.220
SRP279888	Gastro	Gastrodia elata tuber	147.87
	Juven	Juvenile tuber	84.52
	Mother_Gastro	Mother tuber of Gastrodia elata	8.16
	Mother_Juven	Mother tuber of Juvenile	23.73