Detail information of GWHGAAEX004434/evm.TU.scaffold_15.41


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41971.00E-16FOG: PPR repeat
nrgi|743842284|ref|XP_010937762.1|5.96E-17PREDICTED: pentatricopeptide repeat-containing protein At2g37310 [Elaeis guineensis]
Swissprottr|Q9ZUT5|PP191_ARATH4.00E-17Pentatricopeptide repeat-containing protein At2g37310
trEMBLtr|B9HCC6|B9HCC6_POPTR4.00E-17Pentatricopeptide repeat-containing family protein {ECO:0000313|EMBL:EEE92019.1}
TAIRAT2G373101.00E-16Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000019646655646876-
Transcript Sequence

Network for GWHGAAEX004434

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR38611.40E-05
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.650
SRR2545915Juvenile tuber10.610
SRP108465SRR5643513five period of Gastrodia elata4.150
SRR5643514five period of Gastrodia elata11.760
SRR5643515five period of Gastrodia elata15.420
SRR5643524five period of Gastrodia elata5.720
SRR5643525five period of Gastrodia elata0.000
SRR5643528five period of Gastrodia elata0.000
SRR5643658five period of Gastrodia elata3.800
SRR5643659five period of Gastrodia elata9.420
SRR5643660five period of Gastrodia elata28.360
SRR5643661five period of Gastrodia elata18.410
SRR5643662five period of Gastrodia elata9.550
SRR5643663five period of Gastrodia elata8.560
SRR5643664five period of Gastrodia elata26.300
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.830
SRR6049655Rhizomagastrodiae_C368-T10_good_17.550
SRR6049656Rhizomagastrodiae_C368-T07_good_19.160
SRR6049657Rhizomagastrodiae_C368-T07_good_140.340
SRR6049658Rhizomagastrodiae_C368-T04_good_131.630
SRR6049659Rhizomagastrodiae_C368-T04_good_138.430
SRR6049660Rhizomagastrodiae_C368-T01_good_115.480
SRR6049661Rhizomagastrodiae_C368-T04_good_118.920
SRR6049662Rhizomagastrodiae_C368-T01_good_110.770
SRR6049663Rhizomagastrodiae_C368-T01_good_117.630
SRR6049664Rhizomagastrodiae_C368-T10_good_12.810
SRR6049665Rhizomagastrodiae_C368-T10_good_12.810
SRP279888GastroGastrodia elata tuber 50.28
JuvenJuvenile tuber22.18
Mother_GastroMother tuber of Gastrodia elata 0.00
Mother_JuvenMother tuber of Juvenile 23.26