Detail information of GWHGAAEX004435/evm.TU.scaffold_15.42
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 5.00E-111 | FOG: PPR repeat |
| nr | gi|743789890|ref|XP_010923029.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g09220, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q680Z7|PPR24_ARATH | 5.00E-130 | Pentatricopeptide repeat-containing protein At1g09220, mitochondrial (Precursor) |
| trEMBL | tr|I1HSS5|I1HSS5_BRADI | 2.00E-162 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI2G53240.1} |
| TAIR | AT1G09220 | 5.00E-111 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 647565 | 649001 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004435
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 140 | 167 | 0.59 |
| PF13041.5 | PPR_2 | 197 | 236 | 1.60E-08 |
| PF01535.19 | PPR | 274 | 298 | 0.00053 |
| PF13041.5 | PPR_2 | 301 | 349 | 4.00E-08 |
| PF01535.19 | PPR | 376 | 396 | 0.008 |
| PF01535.19 | PPR | 405 | 432 | 0.0069 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.330 |
| SRR2545915 | Juvenile tuber | 3.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.920 |
| SRR5643514 | five period of Gastrodia elata | 5.390 | |
| SRR5643515 | five period of Gastrodia elata | 3.820 | |
| SRR5643524 | five period of Gastrodia elata | 4.830 | |
| SRR5643525 | five period of Gastrodia elata | 1.340 | |
| SRR5643528 | five period of Gastrodia elata | 0.760 | |
| SRR5643658 | five period of Gastrodia elata | 1.360 | |
| SRR5643659 | five period of Gastrodia elata | 5.000 | |
| SRR5643660 | five period of Gastrodia elata | 9.750 | |
| SRR5643661 | five period of Gastrodia elata | 6.010 | |
| SRR5643662 | five period of Gastrodia elata | 3.490 | |
| SRR5643663 | five period of Gastrodia elata | 3.930 | |
| SRR5643664 | five period of Gastrodia elata | 4.290 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.020 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.050 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.460 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.130 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.490 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.700 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.700 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.23 |
| Juven | Juvenile tuber | 9.94 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.34 | |
| Mother_Juven | Mother tuber of Juvenile | 8.59 |