Detail information of GWHGAAEX004439/evm.TU.scaffold_15.46
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1677 | 8.00E-65 | CCCH-type Zn-finger protein |
| nr | gi|743810194|ref|XP_010928827.1| | 1.61E-127 | PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 31-like [Elaeis guineensis] |
| Swissprot | tr|Q7F8R0|C3H14_ORYSJ | 3.00E-114 | Zinc finger CCCH domain-containing protein 14 |
| trEMBL | tr|M0S1C3|M0S1C3_MUSAM | 4.00E-127 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P19650_001} |
| TAIR | AT3G12130 | 8.00E-65 | KH domain-containing protein / zinc finger (CCCH type) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 658131 | 664516 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004439
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00642.23 | zf-CCCH | 41 | 64 | 0.00023 |
| PF00642.23 | zf-CCCH | 111 | 136 | 4.20E-05 |
| PF00013.28 | KH_1 | 187 | 250 | 3.10E-11 |
| PF00642.23 | zf-CCCH | 289 | 313 | 2.40E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 81.690 |
| SRR2545915 | Juvenile tuber | 100.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 203.690 |
| SRR5643514 | five period of Gastrodia elata | 161.410 | |
| SRR5643515 | five period of Gastrodia elata | 180.310 | |
| SRR5643524 | five period of Gastrodia elata | 150.590 | |
| SRR5643525 | five period of Gastrodia elata | 121.960 | |
| SRR5643528 | five period of Gastrodia elata | 242.330 | |
| SRR5643658 | five period of Gastrodia elata | 105.210 | |
| SRR5643659 | five period of Gastrodia elata | 272.960 | |
| SRR5643660 | five period of Gastrodia elata | 327.040 | |
| SRR5643661 | five period of Gastrodia elata | 329.810 | |
| SRR5643662 | five period of Gastrodia elata | 394.780 | |
| SRR5643663 | five period of Gastrodia elata | 302.100 | |
| SRR5643664 | five period of Gastrodia elata | 368.750 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 249.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 250.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 273.730 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 249.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 273.360 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 257.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 283.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 272.220 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 306.380 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 314.640 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 287.570 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 287.570 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 348.03 |
| Juven | Juvenile tuber | 152.88 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 136.20 | |
| Mother_Juven | Mother tuber of Juvenile | 99.40 |