Detail information of GWHGAAEX004446/evm.TU.scaffold_15.53
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|470183145|ref|YP_007569020.1| | 1.00E-74 | DNA helicase, SNF2/RAD54 family domain protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] |
| KOG | KOG0387 | 0 | Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) |
| nr | gi|743763080|ref|XP_010911175.1| | 0 | PREDICTED: protein CHROMATIN REMODELING 24 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q8W103|CHR24_ARATH | 0 | Protein CHROMATIN REMODELING 24 {ECO:0000303|PubMed:16547115} |
| trEMBL | tr|M0TK13|M0TK13_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P23270_001} |
| TAIR | AT5G63950 | 0 | chromatin remodeling 24 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 838222 | 909132 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004446
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00176.22 | SNF2_N | 226 | 517 | 4.90E-44 |
| PF00271.30 | Helicase_C | 569 | 681 | 6.10E-19 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SNF2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.990 |
| SRR2545915 | Juvenile tuber | 13.640 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.820 |
| SRR5643514 | five period of Gastrodia elata | 6.910 | |
| SRR5643515 | five period of Gastrodia elata | 5.770 | |
| SRR5643524 | five period of Gastrodia elata | 6.270 | |
| SRR5643525 | five period of Gastrodia elata | 4.570 | |
| SRR5643528 | five period of Gastrodia elata | 3.610 | |
| SRR5643658 | five period of Gastrodia elata | 4.040 | |
| SRR5643659 | five period of Gastrodia elata | 4.670 | |
| SRR5643660 | five period of Gastrodia elata | 5.710 | |
| SRR5643661 | five period of Gastrodia elata | 5.680 | |
| SRR5643662 | five period of Gastrodia elata | 2.980 | |
| SRR5643663 | five period of Gastrodia elata | 3.390 | |
| SRR5643664 | five period of Gastrodia elata | 3.590 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.500 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.570 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.230 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.400 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.680 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.010 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.24 |
| Juven | Juvenile tuber | 11.30 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.24 | |
| Mother_Juven | Mother tuber of Juvenile | 17.40 |