Gene detail

Detail information of GWHGAAEX004449/evm.TU.scaffold_15.56

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743763087\|ref\|XP_010911198.1\|	0	PREDICTED: F-box protein At5g39450 [Elaeis guineensis]
Swissprot	tr\|Q8RWD6\|FB271_ARATH	4.00E-159	F-box protein At5g39450
trEMBL	tr\|F6H4E1\|F6H4E1_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47152.1}
TAIR	AT5G39450	3.00E-158	F-box family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	917445	919699	+

Transcript Sequence
>GWHTAAEX004449 ATGTCTCCTTTGGGGAAGGATAGGCCCTGCGGTTCTTCCCTATTCCTGAATCTACCGGACGACGTCCTAACCCTAATCTCCGCCCATCTTCTTCCCTGCGATCTCTGCAACATTTCCCTCACCTGCCGCTCTCTTCGCTCCGCTGTTTCATCCTCCGACAAGATCTGGCTCTCTCAGTGTCATCGATGGGGCCTCCCTCACCGTCTTCTCCCCAGCTGGCGCTCCGGTGTCCGATCCTACGGTGCCCTCTGCCGATTTCTCAGCGCTGTTTCCCCTCTTCTCGGCCTCTGGGTTCACCAGAACCCCGAGCTTGGGAACGTCGTGTTCGTGATCTGGGGTTTCCTCTCCGTCGTAGGCTGCCGCGTGATTCCTCAGGAGCTCGGCCCGCTCGGCCTCTCCGCCGGACCTCTCCTCTGGGCCCCCGTCTTTGAGATCATCTCTGACGCCGACGGATCCCCGGAAGCTTTTTTTCTCCACGGCCACGAGCTCGACGACTTGCTTTACCCCGGCGCCGTACCTTCCATCCATCAGGACTGCAACGTCCTCCTCCTTGAGATCGAGAACCAGAGCTCGGAGAGCCTTTGCCTCTCCCCTGCGCTGTTCAGTCAATTGGCCTTCGGCGATCGGCAGAGAATCCTCGATCTTGTTGCAGGAACTGTCCGACTCAACGTGCCGCGGAACCTTCTTTCAGCTCCCCTCTTCCCTTCATGCGCTTCGTCTTCCGCTTTTGACGAAGAGGAAGCTCTTTTGAAGGAAAGGAGGTCGGTTCTGATCAAGATGCATAAGGCCAGCGGCTGCCGTGTTGATTGGAAAGGAGATGAGTTTAATTCAGGTTCCAGTGATTTTTACAACAAAAGCTTTGATTTGGATGGGGTTCCTGTATCTCCATTGCTGAGCTGCAGCTCAGCGGCCAAAAGGCGGAACATTTTCTCCATTGCTGGGTATTTCAGAGATGGGATAAAACAATTCATTGGTAGCGGTAAGCCCAGATCTTCCCACGCTTCCTCCCTGGCTATCAAAAATGCGGCGGATTCTGGAACATCTAGCGAGAGCAAGCATGTTCATCTCCAGGAGTTTTTGAAGGGTGGAGATACTATAGGACTCAGCTTGTCTGCCATTAAAATGAATATAACTACCTACAGAGCTTGGCCAATCATGCATGACAACTGGTTTGCTTTGTATAAGCTTCCATTACAGACGCCTATGGATGGACAAGAGTATGCCGGCCTTTGGGGCGGCACTTTTGGATGGCCTCCAGGGCAATTGTCCGAAGATAAGCCAGGGAAGGCGTTGTTCTTCTTGCTTCTCTCTTATGAAGTTGTTGATGGGCATCCTGTTCTTATTGCAACCAAGATATTGGAAGGAACCCACTATGTTCTCCATCCAAATGGATCCGCCATGTTCATTGTGAAAATCAATGAACCGTCGCCTGACCTGTTCCCTTGGGAGACTTATGTGGATTCGGCACCTGTGGAGGTGAGGCGGACATTTGCGGGGGAGGGTATTGCAAATGGCTATGGTTTTCGGTACCCAGGGTCAAAGCCAGGATCTTTGTTTGAGATTCAGAATGGGAATCTGGCTTTTGTGTGGAAGGAATCAAAGTCTGTTCTAACCATGCAGAGGCTGGAGCTAGAGGATCTCTTGAGGAAAGGGGAGCGAGTACCTTCATTGCCGAGAATTGCAAACTTTGCTTACTTGACAAAGTCCTACTCTAATGTATTTGCAGGATTTCCCAACAGTTCAGTTTGTTCATCTCCACCAAGGTTCAGTTAAATTAGTATCTTTAGTTTTAAAAAATATTGGTGCTGCTTGTTATGAATGAGGTTGTATTTTACATGGAGCTTGAAGACTGATAAAACTTTCAGTTTTATCTACAGCTTTTATCAATATATAGAATTGCTCATTTCAATGAGTCAAGATCATATCATCTGTTAAATTCTAGGATGCTTGGAAGGCTATGTTCTCGTGGTTAAAGTTATCGATGGATTGATAAGCTTTTGGTGACCATTATAATAAGCCGTCTTCTTATTTTTGTTATGATTGATAATAAATGGAAGCATTTTGTGAATAATAATAAGCTTTAGTTTGGCTCTAATTAAACAGACGGAGTGAATAAATCCCAATCTATGGATATTTGCATTGTTTGCGCAATGTTGTAGTCCTATTTTACAGGTTTGCTTGGAATAGTTTTTCTGGATGAGGCAAAGTTTATGGGTTCTTATGGGATAAGTAATTTCGGCTCACCAAAATCTTCA

Network for GWHGAAEX004449

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.32	F-box	14	52	8.50E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	42.450
SRP064423	SRR2545915	Juvenile tuber	22.600
SRP108465	SRR5643513	five period of Gastrodia elata	29.040
	SRR5643514	five period of Gastrodia elata	20.060
	SRR5643515	five period of Gastrodia elata	17.830
	SRR5643524	five period of Gastrodia elata	21.300
	SRR5643525	five period of Gastrodia elata	19.390
	SRR5643528	five period of Gastrodia elata	15.250
	SRR5643658	five period of Gastrodia elata	19.340
	SRR5643659	five period of Gastrodia elata	23.220
	SRR5643660	five period of Gastrodia elata	28.680
	SRR5643661	five period of Gastrodia elata	25.520
	SRR5643662	five period of Gastrodia elata	24.260
	SRR5643663	five period of Gastrodia elata	25.630
	SRR5643664	five period of Gastrodia elata	22.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	23.320
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	23.390
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	28.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	32.800
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	23.410
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.270
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.980
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	20.010
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	21.030
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	21.030
SRP279888	Gastro	Gastrodia elata tuber	20.60
	Juven	Juvenile tuber	26.00
	Mother_Gastro	Mother tuber of Gastrodia elata	14.31
	Mother_Juven	Mother tuber of Juvenile	21.39