Gene detail

Detail information of GWHGAAEX004452/evm.TU.scaffold_15.60

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|297527159\|ref\|YP_003669183.1\|	6.00E-16	thermosome [Staphylothermus hellenicus DSM 12710]
KOG	KOG0230	0	Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins
nr	gi\|672120212\|ref\|XP_008783365.1\|	0	PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A isoform X3 [Phoenix dactylifera]
Swissprot	tr\|Q9XID0\|FAB1D_ARATH	0	Putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D
trEMBL	tr\|K3YFV1\|K3YFV1_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si013119m}
TAIR	AT1G34260	0	FORMS APLOID AND BINUCLEATE CELLS 1A

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	1028745	1049325	-

Transcript Sequence
>GWHTAAEX004452 CTTAACTCGGTGAGACGGAATTATTATGTAGTTTTTCTGAGAGAAGAGCTATGAGTCTACTAATAAATGTGAAAAATACAAGTTATTAGCAGTAATCGGTTTCACTGGAAGCCAATGCATTGTTGGAGGTTTGCTAGAAAGAACCACTAGACTAGAAAGAACAGGATTTAGGTCGTGAGATCGGCAGCGTTATATTCGGGTAACATCGCGTGACAGTAGGGGAGAGTGTTTCACCGAGCAGAGCCGCGCAGAGCAGCTGTTTCGCCGAATATCGACTAGCCTCGCCGAGCTTCTCCCGCCGATTCTCGCCTCGGGACAAATCTGCAGGTTTGGCATGGTTCATGCTATTGATATTGACCAGATGCATGCACACTTGCTTTCTAAGGAGCAGCTGGATGACCTTGAGAATGTTGGATTATTTCAAAACATGGATATTGAGTGTTCCAATGCAAGCAGTGGTTTAGATAGCACAAGAGCTCTTCTATCATTTGAAGAACACTCGCCTTCCTGTTCAATAACATTTAAAAGCTGTCAAGATGGCAGTGTTGAAAGCTTAGAAGAACTCTCGCCTCGGAAACACATAAAAAAAGCTTTTCATAGCAACAAAGCATCAGATTTTACTAGTATTGAGGCAGAATCTCTTATTTGGTTGCCACCTGAACCAGAAGATATGGATAATATTATTGATAACAATGATGATGACGACGACTATACTGATGGTACAAAATGGGGTCTACCATCTTTTTCATGTAATATTGACGAAGACCAAGGGAGCATATGCAGTTATAAAGAGGAACGCCTAAAGGCAATGATGGAAGTGATGAATGGGCTGTTCAGAATTCTTGTAATCCGATGTCTTGCCTCAGAAAGCATCAGTTTTTCCAATGATGCTTCTGGTGAAAACTGGCTCGACATTTTGACTTCCTTATCTTGGGAAGCTGCATTACTTGTTAAGCCTGATGCTAGTGAAGGGAGAGCTATGGATCCTAGCTCTTATGTAAAGGTGAAATGTATTGCATCAGGTTCTCGAAGCCAAAGTCAAGTGATACAGGGTCTTGTTTTTAAGAAGAGTCCTGCACACAAGCACATGCCAACAAAGATACAAAATGCCAAACTTCTATTGCTTAGGGGTTGTCAGGGAAATTCAGCAAATAGTTTGTCATCATTTGAATCAATGGGGAAGGAGAAGAACCATTTGAAGTCCATAGTTGACTTGATCGATACTTGCCAGCCAAATGTGGTGTTGGTCGAGAAAACAGTTTCGCGTGACATACAGGAGGCTCTTTTTGTGAGGGGAATAACTCTGGTCTTTGATATGAAACTCCCACGTTTGGAGAGAATTGCTCTTTGTACTGGTTCCCAGATTGTTCCACTTGGTGATAACACAGTGAGACAAAATCTGAAACAATGTGATACTTTCCGCTTTGAAAAATTTGTAGAGGAACAGAATTCATTCGGGGATACGGATAAACGGATGACAAAAACTTTAATGTTTCTAGAGGGCTGCCCTAAACCCTTAGGGTGTACGATATTGCTGAAAGGTGCTAATAGCGGTGAGCTGAAGAAGATCAAGCGTGCATTACATTATACGGTCTTTGCAGCATATCATTTAAAGATTGAAACATCTTTCTTTGCTGAACAAAAGGCATTTTTCTCTTACATAAATTCTCTAAGGAAGACTGACGATATTTCTAAAGCTGAAATGGTGAACTCAGAAAAATGTGATGATTCTCTGGATTCCAATTTTTTTAATCATCAGGATTGTTCAGTTTGCTCTCCAACAAATGCTGTAGATGTTCCCATTTTTTATGACTCCATGATGGAATTCATCAATGGAGATCAGCCTAATAATTCCTATGAGTCTACACATAAATCATGGCAATTGTTTGGATCCAGTATCAAATCTCTTAGAGATAATATAATGCATAGAAATGTTCCCATCAACGATGATATTTTACCCTCAGTTTCAAATGAATCAGTGTTAATTAGTAAATCTGTGGGAGAAATTCACCCATCTCCATCAGAATCAGTTTCATCATATTTTGAATTGAAAAGGAATGAGCATGGAAGTGACTGTGATGCATTGCGTTGTCCATTGGTAGAAACATTTGATTACAAAAAATCAGATTCTGATTTTGGTATTGGTGGAAAAGATGGCCATTTCTCAGATGCCACACAAACTACTGAAATTCCAATTGGTGAAAACACTAAAGAAGTAAAGCTGCAGTGTAAAGGTGATATAGATAGCGCATTGGATTCTGAAAGCATTTTAGTTCTTTCATCTAGCATATGCATAGCCAAGCAAGTTACTTGTGAGGAGAGTCATCTTTCTCGTATCAAGTACTATGGGGATTTCGATATGTCTCTCGGAAGATACCTGCAAGATATATTGCTTAGCAAGAACTATGCTTGCTCCTCATGTGGAGAACCTTCGGAAGCTCACATGTATAGATTCACCCACTCGAATGGCATTCTTACTGCTAAAGTCAAGCATTGTTCTAAAGGATCAGCATTGCCTGGCGAAGCTGAAGGTAAAATTTGGATGTGGTCTCGGTGCTTAAAGTGTGATCATGATGGAGGAGGTTCAAAAGCCAGTAGGAGGGTGGCAATGTCTGCTGTGGCCCGTCGACTTTCTTTTGGAAAGTTCTTGGATCTCAGCTTCACGGATCACTGTGCAGCTATTTGGTTGTCCAGATGTGGACATTTGCTCCACCGAGACTGCCTTAGATTTTTTGGATTGGGATGTAAAGTTGCAATGTTTCAATATTCCCCAATAGAAATATATACTGCATGCAAGCCACAGCCTTTTTTAGAGTTTAATAGCCAGAAAGGACAAGAGTGGATGAGGAAAGAAGCTGAAGATGTTCTTGCAAAGGGAGAACCTCTTTTCAGAGAGGTTGCTAATGCCTTGCAAAATTTGAAACCTCATTTTACAAGCTTTAGACAAAAGAAGCCTGCGAATTTCTTGGAAGCAGAGAACATGTTTAAAGATGATAAAACTGCATTTGAGGAGTCTGTCCACCAGTATTTCCAGCAACGGAGAAATGTAAACAAGATTCTCGACTTACACTGGCTAAAAAAGGAGCTTCTTTTCATGCTCTATATCTGGGATCGCCGTTTAAATTTTCTGATGCAGCACGTGGGAGGTTTTTCTTGCACTGTCGGCCATGCAGATCAGTTCCAGAAACCTGTATTTGTCAAAGAAAGCTCCATAACAGATGGAGATCATTTTATTGGGAATCTTGAGAAATTGGAAAACAAGCAAGAAATTGAATCAACTCAGACTTATAGAGATCGTAGTCATGTCTCTTTTAATCCCTACATTGACGGAGAGAACTCTCCTAAATTAGTTTCTAAAGAGCATTCTGAAACTGCGACAAATCTTAACACTTTTAACCTACAAAATAATTTCCATTTAAAGAAATTTGATGAAGAGTCTGTTGCGATATTCGTTCATGTTCAGGAAGAAGATTCTCATGAAGTTTCAATTGTACCTTTAAGCTATTCAGAAGAAGGCAAAGGTAATGAAAATTCAATAATGTTACGACGCCAATATAGTTCTGACTCAGATGATCCTGAACAGTGGATGTGGACTCCTTTGTTTGAACTCCTGAAGGCTTTTAGAAAGGACCTTTATTGCGGTTCCTTGTGCAAATTTCGATTTATTAATGATTATACTCCGGTTTACCTTTCTCGAGTGAGCGAGCTCTTCGCTCAAGAATGCACATTGCACTTCACGATTGGCTCGGGCAATGATGTTATGTCTCTTGTTGACGATGAGATATCAAGTATTATTGCGTGTGCTTTGGCATTATGCAGAGAACGGTGCGACCCAGCGGGTGCTATATGCAATATTGACAAAAAAGGATCACTCGATTGCGCAACGGATACTTCAAATAGGCTTCATCATTCTGTGTCGTTGTCGCAGTTTCCAGATTCCGCATCTTTGGAACCCAAACGATTGCTATCAGACGATCTCTTACCTGTTGCTTCTGAAGCTCCGTTATCTGTAGATCAGTTGGTTGCTTCAGATAAGCTGCATCCTGAAGTCTGTTTGGGTGCTGAAAAAAGATGTAAATACTCAGTGATTTGTATATATGCTAAAGAATTTTATTCCCTAAGAAAAAAATGCTGCCCTTCAGAACTAGCGTACATAACTTCACTTAGCCGCTGCAAAAAGTGGAATGCTCAAGGGGGAAAGAGCAAAGTGTTTTTTGCAAAGACTATGGATGACAGATTCATCATAAAACAAATAAAAAAGACAGAGCTCGGTTCATTCTTAAAGTTTGGGCCACAATATTTTAAGTATCTCTCTTTTTCTCTGGATTCAGGTAGCCAAACTTGCCTTGCAAAAATACTGGGGATATATCAGGTTAAGCAAATCAGAAATGGCAAGTTAGTTAAAACCGATCTCATGATTATGGAAAATTTACTGTCTGGGAGAAATATTTCTCGCAAGTACGATCTCAAAGGCGCCATTTTTTCTAGATACGTTCCTATCTCAAATAAATCAGATAATGTTCTTTTAGATGAGAACTTCATTGAGGACATGCGCATGTTTCCAGTATATGTTGATCAAAGAACCAAACATCTGTTGCAAAGAGCCATTTGGAATGACACTTCTTTCCTCAATTCAATTAATGTGATGGATTATTCTTTGCTCGTGGGAGTGGATAGAGAACGCCACGAGCTAGTATTCGGTATTATAGATTATGTGAGGCAGTATACATGGGACAAACAGCTTGAAACATGGGTAAAATCTTCTCTAGTTGTTCCAAAGCATGCTTTGCCAACAGTTGTTTCTCCAAAGGAATACAAGAACAGATTCAGAAAGTTCATGTCAAAGTATCTCATGACTGTTCCAGATATTTGGAGCAGCAAACTTTATTCAGCCTTAGGCAACTTTCTTCTCTCAGGCAGCAATTTTTCATCCTTATCACATGATGAAAATGTTGAGGATCGGACAAATGATGCATATGCTCGATATTCACGTGAACTGGCCGGCTGACTGGCTGCAATGTAGGAGTGTCAGACAGATCAGATTGTTATTCAACCCATTAACCCTAAACTGAATGATTATTCATATTGAATATATGATATGCTGATATATGATTAATGCTATATTGGTTTAAAAGGTCAGCCATCAAATCATGTTATAAATTCAAATTCTTGTAGCTTTGGCGCTTCGATGATTATTGTATATAGCTTCTTGTTCTTTATGATATTGTTCTCAAATGTTGTGACTTTATTGTGTCCAAATGTATTGTTTAGAGGCAGTGTACATATACCTATTGCAAATGTTTATCCAACTGTGTTTAATTCTCT

Network for GWHGAAEX004452

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00118.23	Cpn60_TCP1	189	423	2.30E-24
PF01504.17	PIP5K	1286	1449	2.00E-35
PF01504.17	PIP5K	1452	1505	2.80E-08

Protein Sequence

>GWHPAAEX004452
MVHAIDIDQMHAHLLSKEQLDDLENVGLFQNMDIECSNASSGLDSTRALLSFEEHSPSCSITFKSCQDGSVESLEELSPRKHIKKAFHSNKASDFTSIEAESLIWLPPEPEDMDNIIDNNDDDDDYTDGTKWGLPSFSCNIDEDQGSICSYKEERLKAMMEVMNGLFRILVIRCLASESISFSNDASGENWLDILTSLSWEAALLVKPDASEGRAMDPSSYVKVKCIASGSRSQSQVIQGLVFKKSPAHKHMPTKIQNAKLLLLRGCQGNSANSLSSFESMGKEKNHLKSIVDLIDTCQPNVVLVEKTVSRDIQEALFVRGITLVFDMKLPRLERIALCTGSQIVPLGDNTVRQNLKQCDTFRFEKFVEEQNSFGDTDKRMTKTLMFLEGCPKPLGCTILLKGANSGELKKIKRALHYTVFAAYHLKIETSFFAEQKAFFSYINSLRKTDDISKAEMVNSEKCDDSLDSNFFNHQDCSVCSPTNAVDVPIFYDSMMEFINGDQPNNSYESTHKSWQLFGSSIKSLRDNIMHRNVPINDDILPSVSNESVLISKSVGEIHPSPSESVSSYFELKRNEHGSDCDALRCPLVETFDYKKSDSDFGIGGKDGHFSDATQTTEIPIGENTKEVKLQCKGDIDSALDSESILVLSSSICIAKQVTCEESHLSRIKYYGDFDMSLGRYLQDILLSKNYACSSCGEPSEAHMYRFTHSNGILTAKVKHCSKGSALPGEAEGKIWMWSRCLKCDHDGGGSKASRRVAMSAVARRLSFGKFLDLSFTDHCAAIWLSRCGHLLHRDCLRFFGLGCKVAMFQYSPIEIYTACKPQPFLEFNSQKGQEWMRKEAEDVLAKGEPLFREVANALQNLKPHFTSFRQKKPANFLEAENMFKDDKTAFEESVHQYFQQRRNVNKILDLHWLKKELLFMLYIWDRRLNFLMQHVGGFSCTVGHADQFQKPVFVKESSITDGDHFIGNLEKLENKQEIESTQTYRDRSHVSFNPYIDGENSPKLVSKEHSETATNLNTFNLQNNFHLKKFDEESVAIFVHVQEEDSHEVSIVPLSYSEEGKGNENSIMLRRQYSSDSDDPEQWMWTPLFELLKAFRKDLYCGSLCKFRFINDYTPVYLSRVSELFAQECTLHFTIGSGNDVMSLVDDEISSIIACALALCRERCDPAGAICNIDKKGSLDCATDTSNRLHHSVSLSQFPDSASLEPKRLLSDDLLPVASEAPLSVDQLVASDKLHPEVCLGAEKRCKYSVICIYAKEFYSLRKKCCPSELAYITSLSRCKKWNAQGGKSKVFFAKTMDDRFIIKQIKKTELGSFLKFGPQYFKYLSFSLDSGSQTCLAKILGIYQVKQIRNGKLVKTDLMIMENLLSGRNISRKYDLKGAIFSRYVPISNKSDNVLLDENFIEDMRMFPVYVDQRTKHLLQRAIWNDTSFLNSINVMDYSLLVGVDRERHELVFGIIDYVRQYTWDKQLETWVKSSLVVPKHALPTVVSPKEYKNRFRKFMSKYLMTVPDIWSSKLYSALGNFLLSGSNFSSLSHDENVEDRTNDAYARYSRELAG

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00921	PIKFYVE, FAB1	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Phosphatidylinositol signaling system	map04070
		Phagosome	map04145
		Regulation of actin cytoskeleton	map04810

Gene Ontology

GO term	Ontology	Name
GO:0046488	Biological Process	phosphatidylinositol metabolic process
GO:0005524	Molecular Function	ATP binding
GO:0016307	Molecular Function	phosphatidylinositol phosphate kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.820
SRP064423	SRR2545915	Juvenile tuber	20.780
SRP108465	SRR5643513	five period of Gastrodia elata	8.150
	SRR5643514	five period of Gastrodia elata	10.480
	SRR5643515	five period of Gastrodia elata	9.480
	SRR5643524	five period of Gastrodia elata	9.330
	SRR5643525	five period of Gastrodia elata	11.810
	SRR5643528	five period of Gastrodia elata	7.780
	SRR5643658	five period of Gastrodia elata	11.990
	SRR5643659	five period of Gastrodia elata	14.500
	SRR5643660	five period of Gastrodia elata	16.530
	SRR5643661	five period of Gastrodia elata	13.850
	SRR5643662	five period of Gastrodia elata	13.280
	SRR5643663	five period of Gastrodia elata	16.340
	SRR5643664	five period of Gastrodia elata	15.060
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	10.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.730
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.800
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.330
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.360
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.130
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.720
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.720
SRP279888	Gastro	Gastrodia elata tuber	19.74
	Juven	Juvenile tuber	12.35
	Mother_Gastro	Mother tuber of Gastrodia elata	9.03
	Mother_Juven	Mother tuber of Juvenile	9.83