Gene detail

Detail information of GWHGAAEX004454/evm.TU.scaffold_15.64

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2068	4.00E-128	MOT2 transcription factor
nr	gi\|720013392\|ref\|XP_010260159.1\|	0	PREDICTED: uncharacterized protein LOC104599346 [Nelumbo nucifera]
trEMBL	tr\|W5FJP5\|W5FJP5_WHEAT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_5BL_E931FC626.2}
TAIR	AT3G45630_1	4.00E-128	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	1094718	1121294	-

Transcript Sequence
>GWHTAAEX004454 ATGTTAGGAAGAAAAAAATCTTACAACTGCAGCTGTTTTCTTAGATTTGTTCGCTCCCATCTGGTATTCCAGAATCTCTCTTACGGCCATGGCTCCGATCGTCTCCCGCATGACAACTTTAAGTGATGATGGAGATAGACTTTGTCCCCTTTGTGCTGAAGAGATGGATCTCACTGATCAGCAATTGAAGCCATGCAAGTGTGGATACGAGATTTGTATTTGGTGCTGGCATCATATTATGGAAATGGCTGAGAAAGAGAATGCTGAAGGCCGGTGTCCTGCATGCCGCACTCCATATGATAAGGAGAGAATAGCTGGTATGGCTGTTAACTGTGAGAGGTTGATGGCAGACATGAATGGAGGGAAAAGACATCGGTCCCAAAAGGGGAAACCAAAAGTATCTGTCGATGACAGGAAGCATCTTAGCACTGTTCGAGTGGTACAAAGGAATCTTGTATACATAATTGGAATACCTACTAATCTATGTGATGAAAGTCTGCTTGAGCGGAAGGAATATTTTGGTCAGTATGGGGAAATTTTGAAGGTATCTATTTCCCGTTCAGCTAGTACGACAAATCAACAAGTGTCTAATAGCAATGTATATATTACTTACTCTAGGGAAGAGGATGCTGTTAGATGTATTCAATCTGTACACAATTATTTATTAGCTGGTAAACGCTTAAGAGCATGCTTTGGCACCACTAAGTATTGCCACGCCTGGTTGAGAAATATGAGTTGCAGCAATCCAGATTGTTTATATTTGCATGACATAGGCAGCCAAGAAGATAGCTTCACTAAGGATGAAGTTATTTCATCATATACAAGGAATGGTGTCGCACAGGTTCCGTCCAGTAATTTTCAAAAACGATCTGGAAGTTTATTGCCTCCTCCCACAGAGGAATTGGAAAGCTTACAAGCCGTCTCGTACAAACAATTATTTAATAATGCTGCAAAAGCAACTGAAAGCCCGGCCATAATCTCAAAGGTTAACTCTGAAAAGCATGCTATTCTGCCAGCAGCTTCCTCTTGGGGTTCACGTTCTTCAAATGCCACGGCACTGCCTACAAACATTGCTTGCTCCCCCAACTCAATGAAACTGAATGTAGAAATCAGAAACAATTTATCTCAAATTTCAAATGGCATGGATGCAAATGAGCTGTCTTCTGCATGGCATGATGATGAAGTTGCTACGCCCATGGCTGATGAAGGGCATCGCAAATCTCTTCCATCAGAACCTTCTAAATTTTGTCTTGGCAAAGCTTCCCCAACAACTGCATCAGATTTGTCATCTGATGCATCGGATATGCCATCTGTTACTCTTCATTTTGATGCTCATGGTTCTGGAGATTCAGCATGGGATGATGATTCTGCCATATCTTCTAAATTTGTTGAGGAAAATTTTGTATTACAGACCATGAGCAATTCTACCATAACGACTTCTGCAAAAGCTTTATCTGTAGATAGTGAATTTCAAACATCAGGAGTTGGCCTGCTAACAGATCTTGCACCAGATAAGACTGATTATAGTTCCTCGAAATCATGTTCATTGAGCTGTTCCCTCCCAGTTTCTCAAGATATTGATGTTGTCTTGAGTGCAAGCGGGAGGAAAAAGGATACAGTGAGTTTGATGGCTGATGAAAGCTTGAACAAGCATTCCTGTTGTTCTAGTGTTGTTGTATTAACAACTGCTAATGAGCCAACACATACTTTAGTTTCCTCTCCTGCAAATATGAACAGAAAAATTAAGCGCCATCCAGTATCTGAACACAAGAAGGATGTTTTTGTAGGTTTGTCAACTATGATGAAACGCCAACTATCTTCAAAAGAGCGAAATGATTCTGAAGGTCAAGGAAATTTAATTTCTAATTCATCCATTGAAGTTCCCATCTCTTTAAAGGATGTCTCAGTGTTAGAAACATCCAGTTTGAATTTAGAGTTTCCTATAATGAGTTTTGAATCTATTAGGGATGGGGTTAAAGATAATTCCCTTGCTGTTGTTGATATAAAACCAATAGACTCTGTTGGTGCCATTCAAACATTATGCTCTCCTCATTTTACTTGCAGTCTAAGTAATGAAAATCAAGAACGGAGCTACAATTCAACTGATTTTGATGCAACTACCAACACTTCATCATCTGAAGAGTTTGTTATGCACATCAATACTGAAAGCTCGTTTGACAGGGCTGTGAATAACTCCAATGGAGGCATCAGATTTTTGGATAGTCTTAATAACTTAGGTAGAAATGACAAGGATGCAAGTGTACATACTAAAGAGGACAGCATCATTGCAGATATCTTGTCATTGGACTTTGATCCGTGGAATGACTCAACATCACTAACTAACGACTTGTCTATGCTACTTAGTAAAAATGAAGGCCAAAGCAGTTCTGTTATGCTTTCAAGATCACCAATTTCACAAATTGTCAACCAATCCAGGTTTTCATTTGCTAGACAAGAAGATCAAACCAAATTAGCTGAACCCTCTGCCACAGACATTGAGCACACGAATAGAGGTTGTATGCACCAATATTCATGCAGCAATAATTTTCAATATGGTTTGTCGGTTGATTATCCATATAGCTGTTCATCGCAACATTCAGATAGGCCTGCAGGTATTTCAAGATTCAAAATGTCAGCGCCACCTGGATTCTCGGTGCCAAGCAGACCAGCTCCCCCTGGATTTTCTGCTCAAGATCGTTATGACCAGAATTTCATGGCAGCATCTGCAGAGAGTCGTCTTTGCTCTAATACTCTATTTAGAAATCAGCATGAAGTTCAACCTTCTGAGACTTCTGGTGATGTTGAATTCAATGACCCAGCCATACTGGCTGTTGGTAAAGGTCATATGCCACTTGGAAATAATGTGAACAACGTTGACTTGAGTTCTGCTTTTCCTGCACGGTTCAGATCAGAGGGTAACCTGATACATCAGCTACTGACCAAGCAGTCTGGTTCCACTCCTCAAAATATGAGAATTTCTGACCCTGTAATGCATAGTTATCAAAATATGAGAATTTCAGAATCTGTTATGGATGGATTCTTGCCTCTTAATGATTCATATTTCACATACCAAAACAGTTCATCTCCTTTGGTACAGTTTTCATCTCCTATTTTGAATTCCCACTGGGATGGTTGGAATAGTAAGCAATCTAATACAGCTATGAGCATGGCTGAGGGCATGAAGAATGAAGCATTTGGACTGAATAACTCTTATATTGGCAAAGCTGAATATAGATTTCACATTCCAAGCTCAGGAAATGTATACAGCAGAGCATTTGGCACGTAATTTTGCTTGATTTTTTGCAGCAGCAGAATTAGAGTTCTTTCCTTGAGCATTGCAACAGTGTAACAGTGGAGTTGATTGCTAGGCTCTCGTCGAATGCCTAAGTTTTGCCTTTTGATTGATGAGCAATTTATGCCCCAACTATGCTTCAACTGGGTGTTCTTTAAAAGTACTTAATAAAATTCGCCATATTCAGAGCTGCGGGGAAAATGGAACACTATGTATCGAATAGTGCTGCATTTGGCGTGAGGTTTTTTTTTTTTTT

Network for GWHGAAEX004454

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14570.5	zf-RING_4	19	71	5.40E-21
PF00076.21	RRM_1	123	199	4.20E-05

Protein Sequence

>GWHPAAEX004454
MAPIVSRMTTLSDDGDRLCPLCAEEMDLTDQQLKPCKCGYEICIWCWHHIMEMAEKENAEGRCPACRTPYDKERIAGMAVNCERLMADMNGGKRHRSQKGKPKVSVDDRKHLSTVRVVQRNLVYIIGIPTNLCDESLLERKEYFGQYGEILKVSISRSASTTNQQVSNSNVYITYSREEDAVRCIQSVHNYLLAGKRLRACFGTTKYCHAWLRNMSCSNPDCLYLHDIGSQEDSFTKDEVISSYTRNGVAQVPSSNFQKRSGSLLPPPTEELESLQAVSYKQLFNNAAKATESPAIISKVNSEKHAILPAASSWGSRSSNATALPTNIACSPNSMKLNVEIRNNLSQISNGMDANELSSAWHDDEVATPMADEGHRKSLPSEPSKFCLGKASPTTASDLSSDASDMPSVTLHFDAHGSGDSAWDDDSAISSKFVEENFVLQTMSNSTITTSAKALSVDSEFQTSGVGLLTDLAPDKTDYSSSKSCSLSCSLPVSQDIDVVLSASGRKKDTVSLMADESLNKHSCCSSVVVLTTANEPTHTLVSSPANMNRKIKRHPVSEHKKDVFVGLSTMMKRQLSSKERNDSEGQGNLISNSSIEVPISLKDVSVLETSSLNLEFPIMSFESIRDGVKDNSLAVVDIKPIDSVGAIQTLCSPHFTCSLSNENQERSYNSTDFDATTNTSSSEEFVMHINTESSFDRAVNNSNGGIRFLDSLNNLGRNDKDASVHTKEDSIIADILSLDFDPWNDSTSLTNDLSMLLSKNEGQSSSVMLSRSPISQIVNQSRFSFARQEDQTKLAEPSATDIEHTNRGCMHQYSCSNNFQYGLSVDYPYSCSSQHSDRPAGISRFKMSAPPGFSVPSRPAPPGFSAQDRYDQNFMAASAESRLCSNTLFRNQHEVQPSETSGDVEFNDPAILAVGKGHMPLGNNVNNVDLSSAFPARFRSEGNLIHQLLTKQSGSTPQNMRISDPVMHSYQNMRISESVMDGFLPLNDSYFTYQNSSSPLVQFSSPILNSHWDGWNSKQSNTAMSMAEGMKNEAFGLNNSYIGKAEYRFHIPSSGNVYSRAFGT

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
K10643	CNOT4, NOT4, MOT2	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.400
SRP064423	SRR2545915	Juvenile tuber	31.560
SRP108465	SRR5643513	five period of Gastrodia elata	19.790
	SRR5643514	five period of Gastrodia elata	20.750
	SRR5643515	five period of Gastrodia elata	22.940
	SRR5643524	five period of Gastrodia elata	22.890
	SRR5643525	five period of Gastrodia elata	28.430
	SRR5643528	five period of Gastrodia elata	26.430
	SRR5643658	five period of Gastrodia elata	23.660
	SRR5643659	five period of Gastrodia elata	24.790
	SRR5643660	five period of Gastrodia elata	26.760
	SRR5643661	five period of Gastrodia elata	22.930
	SRR5643662	five period of Gastrodia elata	27.190
	SRR5643663	five period of Gastrodia elata	27.830
	SRR5643664	five period of Gastrodia elata	25.970
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.880
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	22.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.440
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.370
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.220
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	24.830
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.410
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.930
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.290
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.290
SRP279888	Gastro	Gastrodia elata tuber	38.95
	Juven	Juvenile tuber	26.59
	Mother_Gastro	Mother tuber of Gastrodia elata	37.29
	Mother_Juven	Mother tuber of Juvenile	59.12