Gene detail

Detail information of GWHGAAEX004457/evm.TU.scaffold_15.67

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|434388940\|ref\|YP_007099551.1\|	5.00E-20	ribosomal protein L10 [Chamaesiphon minutus PCC 6605]
nr	gi\|255555289\|ref\|XP_002518681.1\|	6.12E-82	50S ribosomal protein L10, putative [Ricinus communis]
Swissprot	tr\|Q9FY50\|RK10_ARATH	1.00E-83	50S ribosomal protein L10, chloroplastic (Precursor)
trEMBL	tr\|B9RY97\|B9RY97_RICCO	2.00E-82	50S ribosomal protein L10, putative {ECO:0000313\|EMBL:EEF43606.1}
TAIR	AT5G13510	5.00E-83	Ribosomal protein L10 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	1160452	1162012	-

Transcript Sequence
>GWHTAAEX004457 ATTCCTAGCTAGTGGCCCGCTCTTCTTAAAACAACAAAAAATATGGAAGCCTCCGTCTTCTGCTCCTCCTTCCCGTCCCAACCCAGCCAAACCCTAGCCAGAAGCCGAACCCCAACCCTCCCTCTTTCAATCCGATCCGCCCTTAGCCGCACGAAGAAGGAGCAAACGGTGGAATCGGTAAAGGTCGAGCTCAAAGACTGCCATTTCCTCGCCGGAATCAATTTCAAGGGCTTCACCGTGATCCATTTCCAAGAGCTCCGCCGTTCCCTTCCTGATTCCGTCCGCCTCGTCGTCGCCAAGAACACGCTTGTCCGGAAGGCGATCGAGGGGACTCCATGGGAGGCCCTTCAGCCCTGCACCAAGGGCATGAACGCTTGGCTCTTCGTCCACTCCGAGGAGTTTGCTTCTGCGATCGAACCCTTCCGTAGGTTTCAGAGGGAGAAGAAGCTTCCGGAGGCGACTGATTTCGTCGGGGGGGTCTTCGAGGGAAAGTTCTATTCCTCGGAGGAGATTAGGGTTTTGGAGACGCTGCCGGGAAGGGCAGAGGTTTATGCGCAGATGATTCGATCGATGAGTTCGCCGTCCATCGGGATCGTCGATCTGCTGCGGTCTCCCGCACGGGAAATTGTGAGCTTGCTCATGGCGTATGTGCTGAAGCTGGAGAAGGCCGAAAGGAACTCTGGCAGCGGCGGCGACGCCTCCATTGCCTGATTTTACAGTATGTGAAATTCCTCTTAACTTTCTTGCTTAATTATGTCATATATACATGCTTTCTAGGCTCATTGTTTCTTGGAACTCGAATTTCCTATCAAATTGATTCAATTTCAAATCGAATTGAATGATTTTGTGTCGAACCACGGGCAGATCTGTGGACTCGTATTATTTTCGAGCTGATTTGAGCCCGATTCAGCAGTCTGAGCTTGAGATTAATAATCTAAGTATTCCTAGCTAAGTAGTGCGCCCAGCTCAATTGGGAGCACAACTTTAGAAAAAAGTTCATAGGTTCAGAGTTTAATTCCAAAATAATGTAGTTTCTTTTCTTGCATATAGATTCAAATTTCGAGCCAGATTCAAATTAATTTTGAGTTGGCTCGAAATTATATTATTTTGCTGAGAGTTATCTTCTTCTGAACCATTCTAAACCAATTGCATAAGGCACTAAAGATTCCCAAGAGGTGTAATTTGCATGAGTCATCCAATTACTATGTGTATATATGTAAATGTATGTGTTCTTATTATGACATTAGTTATATATTTTATTAATATTATTAAACTCTCTTATTCAAATCTCTCTCAACGAGCATGCTAAACATTGGTAGTGAAGAATGGTACGAATGTTATGGCTTCTTCAGCCATCAGTTCGGCCCAGATCTTCTTACCATGCAGGTAGTGTCCTTGTCCATCCCTCTTTGATCTTGAAAATTGATTTAATGCACTTGAAGGCATGAGCATATGTGCTTCATCCAGTCGAGATGACACTTTTTATCTGATTTAGGGGCTGTTTGTCATGAGAAATATGAGGTTAAATACCTTGTAATGAGATTATATTATTGTTGTTGGT

Network for GWHGAAEX004457

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00466.19	Ribosomal_L10	36	121	6.20E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02864	RP-L10, MRPL10, rplJ	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0042254	Biological Process	ribosome biogenesis

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.930
SRP064423	SRR2545915	Juvenile tuber	2.730
SRP108465	SRR5643513	five period of Gastrodia elata	9.470
	SRR5643514	five period of Gastrodia elata	10.550
	SRR5643515	five period of Gastrodia elata	6.730
	SRR5643524	five period of Gastrodia elata	8.850
	SRR5643525	five period of Gastrodia elata	7.180
	SRR5643528	five period of Gastrodia elata	7.180
	SRR5643658	five period of Gastrodia elata	6.800
	SRR5643659	five period of Gastrodia elata	10.140
	SRR5643660	five period of Gastrodia elata	6.850
	SRR5643661	five period of Gastrodia elata	9.540
	SRR5643662	five period of Gastrodia elata	13.120
	SRR5643663	five period of Gastrodia elata	9.590
	SRR5643664	five period of Gastrodia elata	12.020
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.950
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.350
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.390
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.340
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.410
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.990
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	12.800
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.200
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.840
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.840
SRP279888	Gastro	Gastrodia elata tuber	8.77
	Juven	Juvenile tuber	7.91
	Mother_Gastro	Mother tuber of Gastrodia elata	12.24
	Mother_Juven	Mother tuber of Juvenile	6.57