Detail information of GWHGAAEX004458/evm.TU.scaffold_15.68
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|108757087|ref|YP_633291.1| | 3.00E-176 | M1 family peptidase [Myxococcus xanthus DK 1622] |
| KOG | KOG1047 | 0 | Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H |
| nr | gi|672120766|ref|XP_008783659.1| | 0 | PREDICTED: leukotriene A-4 hydrolase homolog [Phoenix dactylifera] |
| Swissprot | tr|Q9FY49|LKHA4_ARATH | 0 | Leukotriene A-4 hydrolase homolog |
| trEMBL | tr|F6HC66|F6HC66_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB49769.1} |
| TAIR | AT5G13520 | 0 | peptidase M1 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 1162220 | 1185357 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004458
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01433.19 | Peptidase_M1 | 225 | 439 | 6.30E-43 |
| PF09127.10 | Leuk-A4-hydro_C | 495 | 610 | 8.10E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01254 | LTA4H | Metabolic pathways | map01100 |
| Arachidonic acid metabolism | map00590 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006508 | Biological Process | proteolysis |
| GO:0008237 | Molecular Function | metallopeptidase activity |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.850 |
| SRR2545915 | Juvenile tuber | 22.730 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 31.780 |
| SRR5643514 | five period of Gastrodia elata | 21.840 | |
| SRR5643515 | five period of Gastrodia elata | 27.400 | |
| SRR5643524 | five period of Gastrodia elata | 25.440 | |
| SRR5643525 | five period of Gastrodia elata | 28.610 | |
| SRR5643528 | five period of Gastrodia elata | 28.450 | |
| SRR5643658 | five period of Gastrodia elata | 31.730 | |
| SRR5643659 | five period of Gastrodia elata | 42.870 | |
| SRR5643660 | five period of Gastrodia elata | 41.630 | |
| SRR5643661 | five period of Gastrodia elata | 48.900 | |
| SRR5643662 | five period of Gastrodia elata | 37.380 | |
| SRR5643663 | five period of Gastrodia elata | 39.700 | |
| SRR5643664 | five period of Gastrodia elata | 36.460 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.730 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 26.340 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.700 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 22.290 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.200 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 22.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.540 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.410 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 20.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 20.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 35.82 |
| Juven | Juvenile tuber | 51.75 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 29.94 | |
| Mother_Juven | Mother tuber of Juvenile | 34.11 |