Gene detail

Detail information of GWHGAAEX004461/evm.TU.scaffold_15.71

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672120701\|ref\|XP_008783627.1\|	0	PREDICTED: nucleoprotein TPR-like [Phoenix dactylifera]
trEMBL	tr\|M0U9E4\|M0U9E4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP15350_001}
TAIR	AT1G58210	9.00E-140	kinase interacting family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	1253428	1258930	+

Transcript Sequence
>GWHTAAEX004461 AGAGAGAGAGAGAGAGAGAGAATGTTGCAGAGAGCAGCGAGCAATGCGTATTCATGGTGGTGGGCGAGCAATATCCGTACGAAGCAGTCCAAGTGGCTCGATGGCAATCTTCAGGAAATGGAGGAGAAGGTGAAGAACATGATCAAGCTCATAGAGGTGGACGCCGACTCCTTTGCCAAAAAGGCGGAGATGTATTTCCGGAGGAGGCCGGAACTGATCAACTTTGTCGAAGAGACATATCGGTCTTACAAAGCTTTGGCCGATCGCTATGATCGGATTTCAGGAGATCTGCACAAGGCTAACCACACCCTTGTGTCAGCTTTCCCGGATCAATTCCAGCTCTCAATGCAGGAGGACGACGAGGACGGCTCGCCAAAGGCATTCGCAGCAATCGATACAAGCAAAAGCCGCAATGTGCCGGCTGGCGACTTACAGCCGATCAACTTACGCAACAGGAACAGGAACCCGGATCCATCCTCAACTGTCGTGAAGAGGCAATATGAGAACATCAACTCCAATGTCACGAATGAGGGTGCGGCCAACGAAATAGACAGGCTTCAGAAAGGCATCCTTGTTCTTCAGACTGAGAAAGAGTTTGTAAAGAGTTCCTATGAGAGCGGCATGACCAAGTTCTGGGAGATCGAGGGGCAGATCGCTGGCTTGCAAGAAAAGGTTTGCGCCCTACAGGATGAATTTGGCATCGGCACCGTAATCGAAGATGATGAAGCCCGGGTCTTGATGGCGGCCACAGCTATCAAGTCATGTGAAGAAAGCCTGGTTACGCTGCGGCGGCAGCAGAAGAAAATGAGCGAAGAGGCAAGCATAGAATCCAAAAGAATCCGGGAAGCCAGAAACAGGCTGCAAATTATCAAGGGAGAGAACAGTGCAGAGGAAATGGAGGAGATGTTTGATGAAGAAACGGGAAGGATCGATGACAATGAGGGGTTTCGTTTTAACAACCAGGGCCTGGACCTGAATTCCATATGCCTACAGGTGAAGCAGCATTTTCAAAATAAATCTCAGGCATCAATGGTTGACTTTGCCGATTGGGTTGATGAGCTTGCAGAGAAAGTCATTAGCATGGATGTAAAGATTTCATCTCAGACGGCACAACTACAGGCCTTGAGATCAGAGACAGACCAGCTTCAGAAGCACCTTCAGGGACTGGAGGAAAAAAGAGCTAATTTGATAACTGGCTCTGTGGAACTAAGGCAGGTGGAAGATGAGCTGAATAGAATTCAAGATCTTGAGAAGAATGTGCATGACGAGAAGCAGATGCTTGAAACTCATTTTGTGGAAGTGCGCAAAAGTCTTGTCAACATTTCAGAAAAGTTACACTCTCTCAGTCATAACGAGAGGAGTAACAGTTCATCTTCGAATGTAGAAAACTTGAACAAGAGTGGAGAAGTAGAAAAGGGGAAGAAAGCCGAGGATGGTGGAAAAGATGATGCAGCTCAGGTGAATGAGATTAATCACGTGAAGGAGCAAGTTTTGCCTAATGCTGATGAGGTTTTTTCACAATTGGGTCATTTTTATGAGAAATTAAAGGCAGATCAATTTGGAGGAACGGTATCATCATTATCCGAGAAAGATGAGCCTGAATGCAGAGATGAGATTCCTGGGTGGAAGGAGATGAAAGCACAGATTCAGGAGCTGAAGACTGTGAATTCTGTGAAAGAACAGGAGATAAGAGCTCTAAGGATGAAGCTGTTCTCTCGAGCTCCTTCAAATGGTGCAGCAAGTTCCCAAAAAAAAAAAGAGAATGAAGTTTCCATTCAAGTGATCAAAATCAAAGCAGATGCTCCAGCAGAGACTACTGGCTCTGAAGAGGGAGCAAAATTATGTAATTTAGACCAGGAACATGTAGCTTCACTCATCGCCGAAAAGTTCAGAGCCGAACTCGATGCTCTTCTTGATGAGAACCTTGGCTTCTGGCTGAGATTCAGCACTTCTTATCATCAAATACGAAAGTTCGAAGCATCTTTTAAAGAGCTCCAAGCTGATCTGAAGATGCTAAAGGACTCTAACAAGGAAGGCAGATCAAGCCCAGCATCCCCAAAACATATATTAAAACTAGACACACAGCCGCCGCTCGATGAGAAGCTCAGGGAGCTTCATACTGAGCTCCAAGTTTGGTTGGAGCAGAATGGGTTGCTGAAGGGAGAGCTCCAATGCAGGTTCAAAAATCTCTGCCAAATTGAGGAAGAGATATTAAGGGCTTCGAGGGACACCGAAGGAAGTAAGGACTACCAGTTGACCCCTTACCAAGCAGCAAAGTTTCAGGGTGAGCTTCTGCACATGCAGCATGAAAACAACAAAGTTACAAAAGAGCTGCAGACCGGTTTGGATCATGCGAAAGGAATTCAATCTGAGGTTGCCAATGATCTCTCAAAATTGAGGGAGAGTTTGAACCTTTTGGACTCGAACAGGCACCACCGCCAATGCCATAATTCAAGACACATGAACACCAAATCTAAGGTTCCGCTAAGAACCTTCCTGTTTGGCGAGAAACGAAAGAAACCGTCCTTCTTCTCGTGCATCAGCCCTACACCAAACAGACACCACCAGGACCCCACATGAAGTCTGGACTCCCTTGTTGACCAGAAAAGGTATGGTAGTAATAGTTTGAGGCATGTTTCCTTCTTTCAACTCTTTTTGTTAGTTCATTTGGTCTGATTTTATCAGGGGGATGTTGAAAATGCAAATTAAAAGATGGCAGCATACTTTACAAGCAGTAAGTTTTGCTGTGATGTGAGACAGATATGCTAGATTTGTTCATTCTTTTTTGCTTGAGCTAAGCAATGAATTTGTTATTTTTAATAAATTAACAACGAATACAAGCCAAAGTTTTTTTGCTTAATCTAGAGAATGTACATTTAAAATACTTAAAGAAGGGTTTGATGAAATCAATGGTGTGACAAAACTGGCTTCCAAGCAAAGAAAGTTAATGTTTGTAGACGAATCTCCTAAAGATGGAAAGATGATGTCTTGATGCAAAGTATTTTTTCAACTTAAGTTTCTGCTAATGATTTGGATTTACAGATTAGCAGAACTTCTTTCCTTGCAGGAATTCTTCTTATGTGCAGCCATCACTATTGTCGTATCTCTGCATTCTACATGTTAACTATGTCAGAAATCATGTTAAATGTTAACACCTGTTCTTCTTCTTGATTTAGAAAACCCACTTAAGGATAATAATGCCTCTCAGTTTTAAAACTAATTAAGATAATCTCCACATGATACGAGGCAAAACTGTTTCTGGATTTACTGATCTCCTAAAAGGACTTTACAAGAAGTGAATCATTATTGAGTCATAAAAAAACAGAGTGAAAACCACCCTATGAACTTGTAGCCTCAATGTGGGGTTTGATCAGACAATCAAACTTTGGATCAGAATTGTTAAAAACAGGTTTTAAAACACTCTTCAATTTGCTTGTGATACATAGCCAGGGCTATGCTAATTGCATTAGAAGAAGCCGGTATTTTGCAAAGCACACCCCCGCAATGCTCCAACACAATGCCAAGCATAATTTTCCATTACAAATTGATAAATTAGAGTGATTGACAATACCTAATCTCGGTTACCAGATGACTGAAAAAG

Network for GWHGAAEX004461

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07765.11	KIP1	11	84	2.30E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003779	Molecular Function	actin binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.350
SRP064423	SRR2545915	Juvenile tuber	1.190
SRP108465	SRR5643513	five period of Gastrodia elata	0.680
	SRR5643514	five period of Gastrodia elata	0.790
	SRR5643515	five period of Gastrodia elata	0.830
	SRR5643524	five period of Gastrodia elata	0.810
	SRR5643525	five period of Gastrodia elata	0.200
	SRR5643528	five period of Gastrodia elata	0.400
	SRR5643658	five period of Gastrodia elata	0.190
	SRR5643659	five period of Gastrodia elata	0.440
	SRR5643660	five period of Gastrodia elata	0.390
	SRR5643661	five period of Gastrodia elata	0.410
	SRR5643662	five period of Gastrodia elata	0.720
	SRR5643663	five period of Gastrodia elata	0.660
	SRR5643664	five period of Gastrodia elata	0.550
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.350
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.840
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.370
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.790
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.950
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.660
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.620
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.620
SRP279888	Gastro	Gastrodia elata tuber	0.55
	Juven	Juvenile tuber	0.51
	Mother_Gastro	Mother tuber of Gastrodia elata	0.48
	Mother_Juven	Mother tuber of Juvenile	0.73