Gene detail

Detail information of GWHGAAEX004464/evm.TU.scaffold_15.74

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|268318203\|ref\|YP_003291922.1\|	1.00E-57	FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Rhodothermus marinus DSM 4252]
KOG	KOG2495	0	NADH-dehydrogenase (ubiquinone)
nr	gi\|743788042\|ref\|XP_010922566.1\|	0	PREDICTED: internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochondrial-like [Elaeis guineensis]
Swissprot	tr\|M0ZYF3\|INDA1_SOLTU	0	Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial (Precursor)
trEMBL	tr\|A0A067LPM2\|A0A067LPM2_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP46479.1}
TAIR	AT1G07180	0	alternative NAD(P)H dehydrogenase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	1314406	1337107	+

Transcript Sequence
>GWHTAAEX004464 GCTTTTATCAAAACTCTATTAAATTAAGTATTTAATTAAAATAGAAAATAATTTTATATTCACTGGGGAAGGTATGAGAAGCCAATTGAGAGCCGCCAACCCCAGCTGTCCCCGCCGCCCCGCCTCTTAAACCGTCTCTGTCATCTTAGCTAAGAAAGCTGCCGCGGCACCATTCCGCCATGGCTTTGCTTCGAACCCTATCTCGCTTCTCTCGTCCCTTCATCAGCGGATCTACATTCCGCTGTTCTCCCTTTTCATCTCCGGCGACTTCGCCGTCTTTCTCCGTTGCGGGAGCCATCGCCGGACTTGAGAAGACGATTCAGGGAAATGATAAGGCTCGCGTTGTGATTATTGGCTCCGGATGGGCGGGTTGCCGCTTGATGAAGGGCATCGATACCGGTATCTACGACGTCGTCTGCGTCTCGCCCAGAAACCACATGGTTTTCACCCCGCTACTCGCTTCAACCTGCGTCGGAACCCTAGAATTTCGTTCCGTTGCGGAGCCGATCAGCCGGATCCAGCCCGCCGTGTCTCGTGCTCCCGGATCGTATTTCTTTCTCGCGCGGTGCACCGCGCTGGATCCGGAATCGCACACGGTGCAATGTGAGACGGTTACAGACAGCACTGGCAGTGCTTCTTCTATTGAACCACGCAAGTTCCAGGTGTCATATGACAAGCTGGTCTTTGCAATGGGGGCAGAGCCTTCAACCTTTGGCATTCAGGGAGTAAAGGAACATGCAAATTTTCTTCGTGAAGTGCACCATGCTCAGGAGATTCGAAGAAAGCTGCTATTGAATCTGATGCTGTCCGATGTGCCTGGTGTATCGGAGGAAGAAAAACGCAGGCTCTTACACTGTGTTGTTATTGGGGGGGGTCCCACAGGAGTTGAGTTTAGCGGTGAATTAAGTGATTTCATACTTAGTGATGTTCATGAAAGATACACCCATGTTAAAAAATACATTCGTGTGACCCTTATTGAGGCAAATGAGATATTGTCATCTTTTGATGTTCGCTTGAGACAGTATGCCATGAAACAATTAACTAAGTCTGGGGTTCAATTGGTACGTGGGATTGTCAAGGATGTTCAGCCTGAAAACATAATTCTAAATGATGGCACTGTGGTTCCATATGGACTCCTGGTGTGGTCAACTGGCGTAGGTCCCTCCCCATTTACTACGTCACTAGACCTGCCAAAGTCGCCTGGCGGAAGGATTGGCGTGGATGACTGGCTTCGCGTTCCTTCTGTACAAGATGTGTTTGCGATTGGAGACTGTAGCGGATTTCTTGAAAGTACACAGAAATCAGTGTTACCTGCTTTAGCACAGGTAGCTGAGAGGCAAGGGAAATACCTCGCCAGCTTACTGAATCGAATTGGCAAAGCAGGCGGCGGGCATTCAAACCGAGCCAAAAATTTAGATTTTGGAAATCCATTTGTATACAAACACCTTGGCAGCATGGCAACAGTTGGGAGATATAAAGCTCTGGTGGATCTTCGGCAAAGCAAGGAGGCCAAAGGCTTGTCTCTTGCTGGTTTTGTCAGCTGGTTTATATGGAGATCTGCGTACCTAACCCGAGTTGTGAGCTGGAGGAATAGGCTGTATGTCGCTATAAACTGGCTAACCACCTTAATATTTGGCCGCGACATAAGCCGCATCTAATCGGAGCATTATATTTACTTATTTTTTAGTCATTTATATACATACAAGCACCTAAACTTTAATATTTGTATAAATTGTAGCGGATTGCATTTATGAATATCAAAGTTTGGGTGCTTATATGTAAAAACTAGAATGTTCGAGGGCGCACAAGCCGGGAAAAATAGCTTCATTGTATGTGTTGTGATTGTTGTTGCTCAATAGTAACACATGATTCTTTGATAAAGCGATGTATCTTTTATAATAATGTACTATATAAATTTTGATATCTATAAAGTTAGTGCTTGATTTTAATGGTGTAAAAGCTCTTTGGTAGTATTATGATTGATAACTGATA

Network for GWHGAAEX004464

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07992.13	Pyr_redox_2	54	388	1.20E-59

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0016491	Molecular Function	oxidoreductase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.850
SRP064423	SRR2545915	Juvenile tuber	15.970
SRP108465	SRR5643513	five period of Gastrodia elata	34.580
	SRR5643514	five period of Gastrodia elata	41.040
	SRR5643515	five period of Gastrodia elata	49.580
	SRR5643524	five period of Gastrodia elata	51.830
	SRR5643525	five period of Gastrodia elata	40.820
	SRR5643528	five period of Gastrodia elata	82.280
	SRR5643658	five period of Gastrodia elata	41.360
	SRR5643659	five period of Gastrodia elata	44.780
	SRR5643660	five period of Gastrodia elata	38.370
	SRR5643661	five period of Gastrodia elata	40.150
	SRR5643662	five period of Gastrodia elata	55.420
	SRR5643663	five period of Gastrodia elata	45.540
	SRR5643664	five period of Gastrodia elata	28.950
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.840
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.060
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.920
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.370
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.830
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.990
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.930
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	33.300
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	14.610
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	14.610
SRP279888	Gastro	Gastrodia elata tuber	63.88
	Juven	Juvenile tuber	40.29
	Mother_Gastro	Mother tuber of Gastrodia elata	85.13
	Mother_Juven	Mother tuber of Juvenile	75.36