Detail information of GWHGAAEX004465/evm.TU.scaffold_15.76
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|108760363|ref|YP_631579.1| | 7.00E-43 | cation efflux family protein [Myxococcus xanthus DK 1622] |
| KOG | KOG1482 | 2.00E-148 | Zn2+ transporter |
| nr | gi|573943254|ref|XP_006654001.1| | 5.48E-164 | PREDICTED: metal tolerance protein 1-like [Oryza brachyantha] |
| Swissprot | tr|Q688R1|MTP1_ORYSJ | 7.00E-156 | Metal tolerance protein 1 |
| trEMBL | tr|J3M3N0|J3M3N0_ORYBR | 2.00E-164 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB05G12040.1} |
| TAIR | AT2G46800 | 2.00E-148 | zinc transporter of Arabidopsis thaliana |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 1373987 | 1379897 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004465
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01545.20 | Cation_efflux | 47 | 298 | 1.20E-45 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006812 | Biological Process | cation transport |
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0008324 | Molecular Function | cation transmembrane transporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.220 |
| SRR2545915 | Juvenile tuber | 1.760 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.060 |
| SRR5643514 | five period of Gastrodia elata | 24.430 | |
| SRR5643515 | five period of Gastrodia elata | 14.230 | |
| SRR5643524 | five period of Gastrodia elata | 23.520 | |
| SRR5643525 | five period of Gastrodia elata | 49.550 | |
| SRR5643528 | five period of Gastrodia elata | 37.150 | |
| SRR5643658 | five period of Gastrodia elata | 57.020 | |
| SRR5643659 | five period of Gastrodia elata | 1.000 | |
| SRR5643660 | five period of Gastrodia elata | 1.170 | |
| SRR5643661 | five period of Gastrodia elata | 1.240 | |
| SRR5643662 | five period of Gastrodia elata | 1.670 | |
| SRR5643663 | five period of Gastrodia elata | 1.490 | |
| SRR5643664 | five period of Gastrodia elata | 2.560 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.360 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.170 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 10.560 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.05 |
| Juven | Juvenile tuber | 1.47 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.46 | |
| Mother_Juven | Mother tuber of Juvenile | 17.20 |