Gene detail

Detail information of GWHGAAEX004468/evm.TU.scaffold_15.79

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672131160\|ref\|XP_008789136.1\|	0	PREDICTED: uncharacterized protein LOC103706709 isoform X1 [Phoenix dactylifera]
trEMBL	tr\|I1HKE5\|I1HKE5_BRADI	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI2G28900.1}
TAIR	AT4G29790	4.00E-122	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	1394170	1419397	-

Transcript Sequence
>GWHTAAEX004468 AGACCATAAAATTGACTATACAAGCCGCCCTTTTGCCCTAGACGACGTAATATTTTTCCATCATAGTATTGTTTTTTCCCAAATCCTATAAAATCGTTTTATTCCGGAGAAAAATTCGAAATTGGGGGAAAATTCCTTTCTCTGTACTAGGTCGATGATCATATCAATCATCCGCTTATTGGGTTTTATTGTTGCGGTTCCTATTTACTTGGATATTGCACACACTTCATCTCAAGTTCAATGATTGCAAGCTACATTCATTCACATTTCTTATCTTTGTATTTGTATTGAATTTTAGTAACTTAGATGGTACGGCAAAACTTTTAAATGGCCGCGAGTGGAAGATTTGATTTGTCTTTGAGCAGGCCAGATGGGCCTACATATGTTACAGGGCAGCGGGGTTCATATGCAGCAGCACATCTAGAGAAGTCAGGGAGCTTTCGTGAGGGTTCCGATCGTATCTTCCCCTCGCATCATAGCACACCAAAGTCTACCACCGTAACTTCTCAAGGAGATATGGCTTTTTTATTGCAGTCTCTTGCTTCTGATCTTAAGGGTGTTAGTCCTGATTCAAAGTTAAATCGCCCTGGTGAGATGAAAAGGGCAATGAGTTCTATTTTTGGCTTATCCACTGAAAACTCCTTGTTGTCTACGTCAGTAACAAGGGCATTTCCTTCATCTTCTTATGATGAGATTAAACGTTTAAAGAACAATCTGCAAGAGGGTTCTACAAAAGCAAGGGATAGAGCTAAAGCTTTTGATGTTGCTTGTTCAATGATTGACAAGTTTTGGCATATCAAAAGAAAGCGTTCTCGATTAGGCTACTCTTCAAATTTGCGGACCGCGGGTATATATCAAGGAGGAAACATTCCCAAGATTGGGCCTCAAAGCCATCCTTCTGGAAGTGGACTTGAGGATGGGTCTCAAAGCGAGGAAAAATCAAAACTTGGAGTACCAAACAAAAGAATTCGAACTTCTCTTCTTGAAATGGATGCATTGACTAGTGCATCAAGATTCTCAGGGCCTCTGGAAAGAGATAAAGATATAGTAAAATCCATAAATGGAAGCACAACACAGTTATATGAAAAAGATGGATCTGTTTCAGCAGTTGGTGATGGCTGGGAAAGGTCAAAATTGAAAAAGAAACGCTCTATAATAAAATCAGATGTTTCATCAAGTTCAGCACTGGCTAGAGTGCAGGAGGAACGAGAAGTTAAAAGGGGAATACAGCCTAAGTTCGGCATCGAAGCTCGACCAAGAATGAATCTTCTACACAGTTTTAGGCCTGGATCCGATAGCAGTACCACAGTGGTTGGAAGTTCAGATACAAGCCCTAAACAACATGCTCCCATCATTCGCACTAGGAATGAACTGAATAGTTGTTCTTTTTTGAATGACAAAAGAGATGTGCGGTTTTCTCCGGACACTGAAAGTTCATCCCTCAAAGTTATTAACAAGCCTAACGCTAGAGAAGATAAGCGGTCAGCAAGTTCTTCGTTTTTAAAATTTGGCTCTTCCCGAACACGTAGCAATTCAGGTTCCTTGCTAAAAACATCATCCAACAGCCATGTGGGAAATCCTGAGGATATGGATCTCCCTCTGGCTATAGAGAAGCAGGATGGTCTTGGTGCTATTAATAGGAAAAGAGCAGCTTCTGTAAGGTCCTTGTCACCTCCTGTAGGGCAGTGGGCTGTACAAAAACAAAAGAAGTTTTGCCGTTCATCTAGAAGAAGATCAAGTCTTTCCCCTCATATTTCAAGCCATGATGATTTGGCTTTATCAGAGACTGTAGATGAAACATCCATCCATTATGATGATATAGGAGAGTCGAGGCAAACATCTTTGAATGCTTCCCAACAGAGTAAAGTGAGAGGGGAAAATTTTCCTTCAGCTTCGTTCTCAGAAAGTGAGGATTCTGGAGTTCAAGAAAAGAAGCTAAAATATAAGGCTAAGAAATCTGCAGAAAGGGAGGATAAAATGGTTCACATTGTTCAGAAGTCTTCAAACCTTGTTATGCCACTAAGGAATAATAGGATGACTGTTGAAGAGGATAGTGCAGATGGTGATCGTAGGCAAGGGAGACTTTCAGGAAGAGGCTTTATTCCCACAAGGTCTGGTTTGTCCGCAACAATTGAGAAGCTTAGTGAGACTGTCACTGCCAAGCAGCAGAGAAGTGTCAGACATGCTTCTGAAAGCAAGCCAGATCGTCCACCTATTAGAAAGTTATCTGAACGTAAAATTTGTACACGTCCAAGGCAGTCGATAAGTGTTTTATCAATCGAATCATCTGAAGAAGCTGCTGATGATCAAGAAGAGCTTGTGGCTGCTGCAACTGCTGCCATTGATACTGGATGGGCTTGTTCCAATTCATTTTGGAAGCAATTGGAGTCAGTCTTTAGATTTGTTTCCTCGGAAGACACATCTTTCTTACTTGAACAGGTGGATCAAGAGAATGTCACTACGTTATCTGAACCAGCTACCAATACATGTAAAAGCACTGCCTTGCCTTATGGGACTAGCTTTTATGAATGTGATACACACAGAGGATTTACCAAGGAGTCAGGGCTTATGGATCCTCTTTTATACAGTGGGGTTTCAATTTGCCAAGCACTTCTTTCAGCTATAATTGGAGAAGAAGATTTCGAAAACATCTATAGTAATGCTGATTATGGGGAAGGGTATTCATACGAGGATGCTGCGCATTTTGAACTGGATAGAGGTTTGAAATTAAAAATTTTGAACTTACAGCCTCTGGAAGATAGCTATACTGCTAAAAAAACTTCAGATTGTTGTAAAGTTGGGGCTAATTGGCGATTCTGTGATGACATTTCAAATGAGAAATCTGGAGCTAATGGCATGTTGGAAACTTATAATAAACTGACATCAAGTGTTCAACAAACATCAAGGCAAACTAGTCCATTCAACACAACATTCACTGAATTTCAGTACAATCAAATGAGCATCAACGACAGACTTATTCTTGAGCTCAATGAAATTGGTCTTTATCCAGAAGTAGAAGCTGTGCCTGACTTGACGTACGGTGAGGATGAGGATATTACAGGAAGTATTTCTTTGTTAGAGGAGAAACTCCATGAACAGGCTGCTAATAGGCTAAACCTGCTCCTCAAATTAAAAGCCGCTGTTTTGAATGCCGAAGAACTTCAACAAAGGAGACTAGAGAGGTTGGCATTGAACCATCTTGTACAGATAGCATATGACAGATATATGGGTTCCTGGGGTCCTAATGCTTCTGGAATCAAGAATGCAAACAAAATTGCAAAACACTCCACCATGGGTTTTGTGCGGCGAACACTGGCTAGAGTTAAAAAGTTCGAAGAGACGGGGATTAGCTGCTTTAATCAACCCATTTTCAGAGATATATTCTTTTCGGCTTCTTCCCTTAATAGCGATTCTCAGAATGCTAAATGCCCCTCCGGTGATCGCCTGAAAAAGAAAGAAGCATTCCTTGACGATGTTGCCAAAAGTTTGGTAGTTCCCTCTGTAGCGACTCCATCTCTCGAAAACTCTCTAACAAGCGGCGGCGTGAAGGGAAAGAGGAGCGAGAGGGAGAGGGATGCCCCATTTAAGAATAGCACTACCAAGAGCGAAAGGAGGAGCAGATCGAAGCCGAAGGTTAAGATGACCCAACCTTCTAAAACGGGAACAAAAATCGAAACAACTCTTCCTTTGAATATGAAAAACGATCCGATCCCACTTCGAGATCGTCCTGGGACGAAAAAATTGACGACTGATGGCAACACTGTCAACTTGAGCCACAACCAGCTTGCAGATATCGATGTTGGGGATCTGGTTGGGCAGGGTCAGGATATCGCCTCCTGGTTGAATTTTGAGGATGAAGGTTTGCAAGACCATGGAGAAGACTTTATGGGTCTTGAGATTCCTTTGGATGATCTCTCCGATGTCCACATGATGATATGAGCTATATATATATATATATATAGT

Network for GWHGAAEX004468

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX004468
MAASGRFDLSLSRPDGPTYVTGQRGSYAAAHLEKSGSFREGSDRIFPSHHSTPKSTTVTSQGDMAFLLQSLASDLKGVSPDSKLNRPGEMKRAMSSIFGLSTENSLLSTSVTRAFPSSSYDEIKRLKNNLQEGSTKARDRAKAFDVACSMIDKFWHIKRKRSRLGYSSNLRTAGIYQGGNIPKIGPQSHPSGSGLEDGSQSEEKSKLGVPNKRIRTSLLEMDALTSASRFSGPLERDKDIVKSINGSTTQLYEKDGSVSAVGDGWERSKLKKKRSIIKSDVSSSSALARVQEEREVKRGIQPKFGIEARPRMNLLHSFRPGSDSSTTVVGSSDTSPKQHAPIIRTRNELNSCSFLNDKRDVRFSPDTESSSLKVINKPNAREDKRSASSSFLKFGSSRTRSNSGSLLKTSSNSHVGNPEDMDLPLAIEKQDGLGAINRKRAASVRSLSPPVGQWAVQKQKKFCRSSRRRSSLSPHISSHDDLALSETVDETSIHYDDIGESRQTSLNASQQSKVRGENFPSASFSESEDSGVQEKKLKYKAKKSAEREDKMVHIVQKSSNLVMPLRNNRMTVEEDSADGDRRQGRLSGRGFIPTRSGLSATIEKLSETVTAKQQRSVRHASESKPDRPPIRKLSERKICTRPRQSISVLSIESSEEAADDQEELVAAATAAIDTGWACSNSFWKQLESVFRFVSSEDTSFLLEQVDQENVTTLSEPATNTCKSTALPYGTSFYECDTHRGFTKESGLMDPLLYSGVSICQALLSAIIGEEDFENIYSNADYGEGYSYEDAAHFELDRGLKLKILNLQPLEDSYTAKKTSDCCKVGANWRFCDDISNEKSGANGMLETYNKLTSSVQQTSRQTSPFNTTFTEFQYNQMSINDRLILELNEIGLYPEVEAVPDLTYGEDEDITGSISLLEEKLHEQAANRLNLLLKLKAAVLNAEELQQRRLERLALNHLVQIAYDRYMGSWGPNASGIKNANKIAKHSTMGFVRRTLARVKKFEETGISCFNQPIFRDIFFSASSLNSDSQNAKCPSGDRLKKKEAFLDDVAKSLVVPSVATPSLENSLTSGGVKGKRSERERDAPFKNSTTKSERRSRSKPKVKMTQPSKTGTKIETTLPLNMKNDPIPLRDRPGTKKLTTDGNTVNLSHNQLADIDVGDLVGQGQDIASWLNFEDEGLQDHGEDFMGLEIPLDDLSDVHMMI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	17.950
SRP064423	SRR2545915	Juvenile tuber	14.460
SRP108465	SRR5643513	five period of Gastrodia elata	10.440
	SRR5643514	five period of Gastrodia elata	13.130
	SRR5643515	five period of Gastrodia elata	11.840
	SRR5643524	five period of Gastrodia elata	12.300
	SRR5643525	five period of Gastrodia elata	17.900
	SRR5643528	five period of Gastrodia elata	12.090
	SRR5643658	five period of Gastrodia elata	13.710
	SRR5643659	five period of Gastrodia elata	15.940
	SRR5643660	five period of Gastrodia elata	16.600
	SRR5643661	five period of Gastrodia elata	13.930
	SRR5643662	five period of Gastrodia elata	13.260
	SRR5643663	five period of Gastrodia elata	14.130
	SRR5643664	five period of Gastrodia elata	17.560
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	14.430
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.040
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.520
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.900
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.850
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	17.010
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.020
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.880
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.780
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.180
SRP279888	Gastro	Gastrodia elata tuber	31.11
	Juven	Juvenile tuber	26.96
	Mother_Gastro	Mother tuber of Gastrodia elata	12.06
	Mother_Juven	Mother tuber of Juvenile	24.82