Detail information of GWHGAAEX004473/evm.TU.scaffold_15.84


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|557694902|ref|YP_008797956.1|1.00E-16ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
KOGKOG04204.00E-101Ubiquitin-protein ligase
nrgi|743851499|ref|XP_010940147.1|1.21E-114PREDICTED: NEDD8-conjugating enzyme Ubc12-like [Elaeis guineensis]
Swissprottr|Q9SDY5|RCE1_ARATH2.00E-103NEDD8-conjugating enzyme Ubc12
trEMBLtr|B3TLR3|B3TLR3_ELAGV3.00E-115RUB1 conjugating enzyme {ECO:0000313|EMBL:ACF06494.1}
TAIRAT2G186004.00E-101Ubiquitin-conjugating enzyme family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000001914800021504351+
Transcript Sequence

Network for GWHGAAEX004473

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00179.25UQ_con391742.00E-37
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyUBC

KEGG pathway

KO Enzyme pathway mapID
K10579UBE2M, UBC12 Ubiquitin mediated proteolysis map04120

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms81.550
SRR2545915Juvenile tuber102.850
SRP108465SRR5643513five period of Gastrodia elata65.330
SRR5643514five period of Gastrodia elata69.510
SRR5643515five period of Gastrodia elata63.390
SRR5643524five period of Gastrodia elata67.310
SRR5643525five period of Gastrodia elata97.840
SRR5643528five period of Gastrodia elata79.350
SRR5643658five period of Gastrodia elata93.360
SRR5643659five period of Gastrodia elata60.000
SRR5643660five period of Gastrodia elata67.090
SRR5643661five period of Gastrodia elata62.160
SRR5643662five period of Gastrodia elata88.490
SRR5643663five period of Gastrodia elata64.790
SRR5643664five period of Gastrodia elata86.390
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_177.330
SRR6049655Rhizomagastrodiae_C368-T10_good_185.350
SRR6049656Rhizomagastrodiae_C368-T07_good_171.610
SRR6049657Rhizomagastrodiae_C368-T07_good_176.790
SRR6049658Rhizomagastrodiae_C368-T04_good_170.780
SRR6049659Rhizomagastrodiae_C368-T04_good_179.940
SRR6049660Rhizomagastrodiae_C368-T01_good_170.130
SRR6049661Rhizomagastrodiae_C368-T04_good_173.990
SRR6049662Rhizomagastrodiae_C368-T01_good_169.470
SRR6049663Rhizomagastrodiae_C368-T01_good_160.570
SRR6049664Rhizomagastrodiae_C368-T10_good_181.530
SRR6049665Rhizomagastrodiae_C368-T10_good_181.530
SRP279888GastroGastrodia elata tuber 81.37
JuvenJuvenile tuber131.19
Mother_GastroMother tuber of Gastrodia elata 84.74
Mother_JuvenMother tuber of Juvenile 83.93