Detail information of GWHGAAEX004475/evm.TU.scaffold_15.86
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|743781821|ref|XP_010920987.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105044698 [Elaeis guineensis] |
| Swissprot | tr|F4KBP5|CHR4_ARATH | 3.00E-06 | Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115} |
| trEMBL | tr|M0U5G2|M0U5G2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP01500_001} |
| trEMBL | tr|M0U5G2|M0U5G2_MUSAM | 7.00E-58 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP01500_001} |
| TAIR | AT5G58610_2 | 2.00E-108 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 1514870 | 1560728 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004475
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05641.11 | Agenet | 24 | 99 | 8.20E-10 |
| PF16135.4 | Jas | 922 | 994 | 3.20E-21 |
| PF00628.28 | PHD | 1034 | 1076 | 1.20E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PHD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008080 | Molecular Function | N-acetyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 23.180 |
| SRR2545915 | Juvenile tuber | 25.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 17.370 |
| SRR5643514 | five period of Gastrodia elata | 19.240 | |
| SRR5643515 | five period of Gastrodia elata | 15.220 | |
| SRR5643524 | five period of Gastrodia elata | 16.990 | |
| SRR5643525 | five period of Gastrodia elata | 12.300 | |
| SRR5643528 | five period of Gastrodia elata | 8.710 | |
| SRR5643658 | five period of Gastrodia elata | 8.640 | |
| SRR5643659 | five period of Gastrodia elata | 17.020 | |
| SRR5643660 | five period of Gastrodia elata | 17.790 | |
| SRR5643661 | five period of Gastrodia elata | 17.010 | |
| SRR5643662 | five period of Gastrodia elata | 14.460 | |
| SRR5643663 | five period of Gastrodia elata | 15.980 | |
| SRR5643664 | five period of Gastrodia elata | 16.450 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 19.760 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 20.090 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.680 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 21.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.050 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 22.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 22.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 19.15 |
| Juven | Juvenile tuber | 32.45 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 13.12 | |
| Mother_Juven | Mother tuber of Juvenile | 24.32 |