Detail information of GWHGAAEX004479/evm.TU.scaffold_15.91
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|436833792|ref|YP_007319008.1| | 2.00E-11 | hypothetical protein FAES_0403 [Fibrella aestuarina BUZ 2] |
| nr | gi|672112287|ref|XP_008804963.1| | 0 | PREDICTED: inactive receptor-like serine/threonine-protein kinase At2g40270 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|C0LGU7|Y5458_ARATH | 1.00E-151 | Probable LRR receptor-like serine/threonine-protein kinase At5g45840 (Precursor) |
| trEMBL | tr|M0SWT2|M0SWT2_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P08530_001} |
| TAIR | AT5G45840 | 5.00E-151 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 1677569 | 1682494 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004479
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 30 | 70 | 2.20E-07 |
| PF13855.5 | LRR_8 | 98 | 157 | 3.70E-09 |
| PF07714.16 | Pkinase_Tyr | 369 | 615 | 2.40E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-VI-2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.260 |
| SRR2545915 | Juvenile tuber | 22.710 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 26.480 |
| SRR5643514 | five period of Gastrodia elata | 22.000 | |
| SRR5643515 | five period of Gastrodia elata | 33.440 | |
| SRR5643524 | five period of Gastrodia elata | 26.300 | |
| SRR5643525 | five period of Gastrodia elata | 55.150 | |
| SRR5643528 | five period of Gastrodia elata | 53.840 | |
| SRR5643658 | five period of Gastrodia elata | 56.030 | |
| SRR5643659 | five period of Gastrodia elata | 32.470 | |
| SRR5643660 | five period of Gastrodia elata | 24.410 | |
| SRR5643661 | five period of Gastrodia elata | 34.020 | |
| SRR5643662 | five period of Gastrodia elata | 30.690 | |
| SRR5643663 | five period of Gastrodia elata | 26.470 | |
| SRR5643664 | five period of Gastrodia elata | 36.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 30.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 34.900 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 32.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 30.620 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 30.800 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 34.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 39.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 30.920 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 45.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 31.100 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 31.100 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 25.95 |
| Juven | Juvenile tuber | 17.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 83.67 | |
| Mother_Juven | Mother tuber of Juvenile | 47.66 |