Gene detail

Detail information of GWHGAAEX004481/evm.TU.scaffold_15.93

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672160058\|ref\|XP_008799799.1\|	0	PREDICTED: protein trichome birefringence-like 34 [Phoenix dactylifera]
Swissprot	tr\|O80919\|TBL34_ARATH	4.00E-166	Protein trichome birefringence-like 34
trEMBL	tr\|D7SR66\|D7SR66_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI18111.3}
TAIR	AT2G38320	7.00E-165	TRICHOME BIREFRINGENCE-LIKE 34

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000019	1688347	1695226	+

Transcript Sequence
>GWHTAAEX004481 AAAAAAAAAAAGCATTTCAGTCATTCCAGCTTGGGCGGGGTCCACCGCAACCGCCATTTCCTTACTTTAACTTCCCTTCAAAGCTAAGCAAGCAATACCCCTTTCCTACGATGAGCCCTAACCCAGTAGAAAACCCTTCCTCCTTGAGCCCCAGGCTATGGCACGCTCTCGAGATGGCGACGAAGATCCACAGACCCTTCAGTGCCATGGCCGCATTGAACCTAACTATCTTTCGCGTCAGGTCCCTCGCTGCGGCGGCGTCGCTTGCTCTTCCGGCCGTCTTCCTCGTCGTTTTCTTTTCGCGTATGCCTGCCGGCGGAGATATCCTCCGCGCCTTCGCCTCCACCGGCGAGGCTTGCAATCTGTTCTCTGGAAAGTGGGTGCGCGACAGCGCCGCCCGTTCTCTGTACTCTGAGACGACGTGCGGGTTCATGTCGGACCAAGCAGCCTGCGAGAAGTTCGGGAGGCAGAATCTTAGGTATCAGAGCTGGAGGTGGCAACCTCACGGCTGCGATCTTCCGAGCTTCAATGCTACAAAACTCCTGGAGAGGCTCAGAGGTAAAAGGCTTGCGTTTGTTGGTGACTCTCTCAATAGGAACCAATGGGTTTCCATGGTTTGTCTTCTTGATTCGGTCATTCCTCATGATATGAAATCCGTTGAAACAAATGGCTCTCTCACCTGCTTTAAAGCCAAGGAATATAATGCATCAATTGCATTTTATTGGGCTCCATTGTTGGTCGAGTCGAACTCCGATGATCCGGTGCACCATCGGATTCCAGACAGGATTATTCGAGCTCAATCGATCGAGAAACATGCTCGGCACTGGATGGAAGCAGATTTTCTGGTTTTCAACTCTTATCTTTGGTGGAGGAGGGACAAGATGAAGGTCTTGTGGGGTTCTTTTGATGACAATGATGCAATCTACAAAGAGATTGAAATTATGAGAAGCTTTGAGATGGCATTGAGGACTTGGGCAGAATGGCTTGAGTTCAATGTGGATCATGCAAAGACCAGGATCTACTTTATGAGCTTGTCACCGACTCATTTTTGGGGTGACGAGTGGGGAGCTGAAAGCAGCCAGAATTGCTACAATGAAACAGAGCCAATCACCAAAGACGAGCACTGGGGAAGAGGATCCGACAGGAGGATGATCAGGGCCGTCGAATTGGCAGTTTTGGATCTGAGGGAGAGATCTGGCGTGCAAGTGCATATTCTTAACATCACCCAACTCTCAGAGTATAGGAAAGATGGACACCCATCTATTTACAGAAAGCAATGGGAACCCCTAACAGAACAGCAGCTTGATAATCCAAGCAGTTATGCTGACTGCATCCATTGGTGTTTACCTGGAGTGCCTGATGTATGGAACGAACTATTATCCACTTACATTCTTTCCAAATGATTTTTCATATTTTTCTTGGCTCGCTTACAACAGCATGTTTCCTGAAAAATTCTGGCTTCCATTGAAATTTTCTCCTTATTTGTTCAGTGCATTTTCTCCATAGAATGGTCTCAAAATAGATCTCTTACCATGCATAGTTTTAAGAGAAAAAAAAAAGGATTGCTTTGAGATAAATATGCATCATGCTAAATTAGTAGGGAGCTCTGAACGGGTGTTGTG

Network for GWHGAAEX004481

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14416.5	PMR5N	82	135	3.30E-20
PF13839.5	PC-Esterase	136	425	6.20E-97

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.560
SRP064423	SRR2545915	Juvenile tuber	13.110
SRP108465	SRR5643513	five period of Gastrodia elata	7.950
	SRR5643514	five period of Gastrodia elata	5.830
	SRR5643515	five period of Gastrodia elata	5.130
	SRR5643524	five period of Gastrodia elata	4.360
	SRR5643525	five period of Gastrodia elata	70.290
	SRR5643528	five period of Gastrodia elata	46.040
	SRR5643658	five period of Gastrodia elata	120.480
	SRR5643659	five period of Gastrodia elata	6.470
	SRR5643660	five period of Gastrodia elata	8.780
	SRR5643661	five period of Gastrodia elata	6.220
	SRR5643662	five period of Gastrodia elata	7.920
	SRR5643663	five period of Gastrodia elata	8.590
	SRR5643664	five period of Gastrodia elata	10.170
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.720
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.920
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.370
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.190
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.530
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.590
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.850
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.830
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.720
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.720
SRP279888	Gastro	Gastrodia elata tuber	8.05
	Juven	Juvenile tuber	14.61
	Mother_Gastro	Mother tuber of Gastrodia elata	14.21
	Mother_Juven	Mother tuber of Juvenile	15.22