Detail information of GWHGAAEX004483/evm.TU.scaffold_15.95
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 2.00E-51 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|672160078|ref|XP_008799811.1| | 0 | PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Phoenix dactylifera] |
| Swissprot | tr|Q9SCT4|IMK2_ARATH | 0 | Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 (Precursor) |
| trEMBL | tr|B9SL14|B9SL14_RICCO | 0 | Systemin receptor SR160, putative {ECO:0000313|EMBL:EEF35705.1} |
| TAIR | AT3G51740 | 0 | inflorescence meristem receptor-like kinase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000019 | 1699688 | 1702630 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX004483
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 39 | 79 | 1.20E-09 |
| PF13855.5 | LRR_8 | 155 | 214 | 1.20E-06 |
| PF00560.32 | LRR_1 | 252 | 273 | 0.093 |
| PF00560.32 | LRR_1 | 275 | 297 | 1.5 |
| PF13855.5 | LRR_8 | 298 | 358 | 6.40E-07 |
| PF07714.16 | Pkinase_Tyr | 486 | 749 | 2.10E-39 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-III |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.060 |
| SRR2545915 | Juvenile tuber | 0.040 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.140 |
| SRR5643514 | five period of Gastrodia elata | 4.420 | |
| SRR5643515 | five period of Gastrodia elata | 1.370 | |
| SRR5643524 | five period of Gastrodia elata | 2.620 | |
| SRR5643525 | five period of Gastrodia elata | 0.150 | |
| SRR5643528 | five period of Gastrodia elata | 0.130 | |
| SRR5643658 | five period of Gastrodia elata | 0.050 | |
| SRR5643659 | five period of Gastrodia elata | 0.100 | |
| SRR5643660 | five period of Gastrodia elata | 0.030 | |
| SRR5643661 | five period of Gastrodia elata | 0.030 | |
| SRR5643662 | five period of Gastrodia elata | 0.060 | |
| SRR5643663 | five period of Gastrodia elata | 0.040 | |
| SRR5643664 | five period of Gastrodia elata | 0.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.690 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.870 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.530 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.150 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.580 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.25 |
| Juven | Juvenile tuber | 0.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.83 | |
| Mother_Juven | Mother tuber of Juvenile | 1.23 |